Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATCCACAAGATGCTGCAGAATCTCTTATTCCACTTTTGGAGGAAGCAGAAGCTGCTGTTCCTCAGGAGTTTCACCCCAGGACGCCAGTTAAACTTGGAgtgcgtattcctcaacttaatatcatgaaaattattttatttaattagaatttaattgaaatagtgtcaaattttgttagcctatcatgccattacatat...

Basic information

species Glycine max
transcript GLYMA16G04770.4
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26057562|gb|CA800476.1|CA800476
EST:     AAGCTGCTGTTCCTCAGGAGTTTCACCCCAGGACGCCAGTTAAACTTGGA                         GCAACTGCAGGTTTAAGGCAATTGGAAGGGGATGCTTCTGATAGGATATTG
genomic: AAGCTGCTGTTCCTCAGGAGTTTCACCCCAGGACGCCAGTTAAACTTGGAgtgcgtattc ... ggcaatgcagGCAACTGCAGGTTTAAGGCAATTGGAAGGGGATGCTTCTGATAGGATATTG
EST: gi|9902312|gb|BE611280.1|BE611280
EST:     AAGCTGCTGTTCCTCAGGAGTTTCACCCCAGGACGCCAGTTAAACTTGGA                         GCAACTGCAGGTTTAAGGCAATTGGAAGGGGATGCTTCTGATAGGATATTG
genomic: AAGCTGCTGTTCCTCAGGAGTTTCACCCCAGGACGCCAGTTAAACTTGGAgtgcgtattc ... ggcaatgcagGCAACTGCAGGTTTAAGGCAATTGGAAGGGGATGCTTCTGATAGGATATTG
EST: gi|151404717|gb|EV274531.1|EV274531
EST:     TGCTGTTCCTCAGGAGTTTCACCCCAGGACGCCAGTTAAACTTGGA                         GCAACTGCAGGTTTAAGGCAATTGGAAGGGGATGCTTCTGATAGGATATTG
genomic: TGCTGTTCCTCAGGAGTTTCACCCCAGGACGCCAGTTAAACTTGGAgtgcgtattc ... ggcaatgcagGCAACTGCAGGTTTAAGGCAATTGGAAGGGGATGCTTCTGATAGGATATTG
EST: gi|7326536|gb|AW620334.1|AW620334
EST:     AAGCTGCTGTTCCTCAGGAGTTTCACCCCAGGACGCCAGTTAAACTTGGA                         GCAACTGCAGGTTTAAGGCAATTGGAAGGGGATGCTTCTGATAGGATATTG
genomic: AAGCTGCTGTTCCTCAGGAGTTTCACCCCAGGACGCCAGTTAAACTTGGAgtgcgtattc ... ggcaatgcagGCAACTGCAGGTTTAAGGCAATTGGAAGGGGATGCTTCTGATAGGATATTG
EST: gi|4293036|gb|AI441990.1|AI441990
EST:     GTTCCTCAGGAGTTTCACCCCAGGACGCCAGTTAAACTTGGA                         GCAACTGCAGGTTTAAGGCAATTGGAAGGGGATGCTTCTGATAGGATATTG
genomic: GTTCCTCAGGAGTTTCACCCCAGGACGCCAGTTAAACTTGGAgtgcgtattc ... ggcaatgcagGCAACTGCAGGTTTAAGGCAATTGGAAGGGGATGCTTCTGATAGGATATTG
EST: gi|23732353|gb|BU764336.1|BU764336
EST:     AAGCTGCTGTTCCTCAGGAGTTTCACCCCAGGACGCCAGTTAAACTTGGA                         GCAACTGCAGGTTTAAGGCAATTGGAAGGGGATGCTTCTGATAGGATATTG
genomic: AAGCTGCTGTTCCTCAGGAGTTTCACCCCAGGACGCCAGTTAAACTTGGAgtgcgtattc ... ggcaatgcagGCAACTGCAGGTTTAAGGCAATTGGAAGGGGATGCTTCTGATAGGATATTG
EST: gi|151409575|gb|EV279383.1|EV279383
EST:     AAGCTGCTGTTCCTCAGGAGTTTCACCCCAGGACGCCAGTTAAACTTGGA                         GCAACTGCAGGTTTAAGGCAATTGGAAGGGGATGCTTCTGATAGGATATTG
genomic: AAGCTGCTGTTCCTCAGGAGTTTCACCCCAGGACGCCAGTTAAACTTGGAgtgcgtattc ... ggcaatgcagGCAACTGCAGGTTTAAGGCAATTGGAAGGGGATGCTTCTGATAGGATATTG
EST: gi|5508917|gb|AI855475.1|AI855475
EST:     AAGCTGCTGTTCCTCAGGAGTTTCACCCCAGGACGCCAGTTAAACTTGGA                         GCAACTGCAGGTTTAAGGCAATTGGAAGGGGATGCTTCTGATAGGATATTG
genomic: AAGCTGCTGTTCCTCAGGAGTTTCACCCCAGGACGCCAGTTAAACTTGGAgtgcgtattc ... ggcaatgcagGCAACTGCAGGTTTAAGGCAATTGGAAGGGGATGCTTCTGATAGGATATTG
EST: gi|19934529|gb|BQ079559.1|BQ079559
EST:     AAGCTGCTGTTCCTCAGGAGTTTCACCCCAGGACGCCAGTTAAACTTGGA                         GCAACTGCAGGTTTAAGGCAATTGGAAGGGGATGCTTCTGATAGGATATTG
genomic: AAGCTGCTGTTCCTCAGGAGTTTCACCCCAGGACGCCAGTTAAACTTGGAgtgcgtattc ... ggcaatgcagGCAACTGCAGGTTTAAGGCAATTGGAAGGGGATGCTTCTGATAGGATATTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAATCCACAAGATGCTGCAGAATCTCTTATTCCACTTTTGGAGGAAGCAGAAGCTGCTGTTCCTCAGGAGTTTCACCCCAGGACGCCAGTTAAACTTGGAgtgcgtattcctcaacttaatatcatgaaaattattttatttaattagaatttaattgaaatagtgtcaaattttgttagcctatcatgccattacatat

- - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT