Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|21677735|gb|BQ630086.1|BQ630086EST: GCCTTGTAGACAACAACAAACCCATCAAGCTCAAAGACTCCTCCATGAGA TTGGATGATTGGGTTCTTTGCCGGATTTACAAGAAGTCCAAACATGCTCTA
genomic: GCCTTGTAGACAACAACAAACCCATCAAGCTCAAAGACTCCTCCATGAGAgtaagtgtca ... tttattgcagTTGGATGATTGGGTTCTTTGCCGGATTTACAAGAAGTCCAAACATGCTCTA
EST:
gi|192302989|gb|FG997005.1|FG997005EST: GCCTTGTAGACAACAACAAACCCATCAAGCTCAAAGACTCCTCCATGAGA TTGGATGATTGGGTTCTTTGCCGGATTTACAAGAAGTCCAAACATGCTCTA
genomic: GCCTTGTAGACAACAACAAACCCATCAAGCTCAAAGACTCCTCCATGAGAgtaagtgtca ... tttattgcagTTGGATGATTGGGTTCTTTGCCGGATTTACAAGAAGTCCAAACATGCTCTA
EST:
gi|10232144|gb|BE801032.1|BE801032EST: GCCTTGTAGACAACAACAAACCCATCAAGCTCAAAGACTCCTCCATGAGA TTGGATGATTGGGTTCTTTGCCGGATTTACAAGAAGTCCAAACATGCTCTA
genomic: GCCTTGTAGACAACAACAAACCCATCAAGCTCAAAGACTCCTCCATGAGAgtaagtgtca ... tttattgcagTTGGATGATTGGGTTCTTTGCCGGATTTACAAGAAGTCCAAACATGCTCTA
EST:
gi|6069768|gb|AW099384.1|AW099384EST: GCCTTGTAGACAACAACAAACCCATCAAGCTCAAAGACTCCTCCATGAGA TTGGATGATTGGGTTCTTTGCCGGATTTACAAGAAGTCCAAA
genomic: GCCTTGTAGACAACAACAAACCCATCAAGCTCAAAGACTCCTCCATGAGAgtaagtgtca ... tttattgcagTTGGATGATTGGGTTCTTTGCCGGATTTACAAGAAGTCCAAA
EST:
gi|17402168|gb|BM178950.1|BM178950EST: GCCTTGTAGACAACAACAAACCCATCAAGCTCAAAGACTCCTCCATGAGA TTGGATGATTGGGTTCTTTGCCGGATTTACAAGAAGTCCAAACATGCTCTA
genomic: GCCTTGTAGACAACAACAAACCCATCAAGCTCAAAGACTCCTCCATGAGAgtaagtgtca ... tttattgcagTTGGATGATTGGGTTCTTTGCCGGATTTACAAGAAGTCCAAACATGCTCTA
EST:
gi|10844889|gb|BF068085.1|BF068085EST: GCCTTGTAGACAACAACAAACCCATCAAGCTCAAAGACTCCTCCATGAGA TTGGATGATTGGGTTCTTTGCCGGATTTACAAGAAGTCCAAACATGCTCTA
genomic: GCCTTGTAGACAACAACAAACCCATCAAGCTCAAAGACTCCTCCATGAGAgtaagtgtca ... tttattgcagTTGGATGATTGGGTTCTTTGCCGGATTTACAAGAAGTCCAAACATGCTCTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGGAAGACCCCCAAAGGGTGTCAAGACCAATTGGATCATGCATGAATATCGCCTTGTAGACAACAACAAACCCATCAAGCTCAAAGACTCCTCCATGAGAgtaagtgtcacatgtccctactagcaataaggttttttagattacattttcatagtaattcttgatattgtcgaacttaggagaaattattatatagtct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC