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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTAGCAGCCACCAACAGGAACTTTAAGTTGGCCTCTAGGCTTCTGGGATTGGATTCAAAGCTTGAGAAAAGTTTACTGATTCCATTCAGGGAAATCAAGgcacgtaaaattgcttcttgtgtgttttcatgtccttgttctggcaaaattagtttacttgttttcactatactgtttcatatagttcaccaactctagttctaaataaatgtttcacaataatgcag

Basic information

species Glycine max
transcript GLYMA16G04560.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G04560.2 (Glycine max), 5'ss of exon 2
lower sequence: AT3G03910.1 (Arabidopsis thaliana), 5'ss of exon 1
ACTAGCAGCCACCAACAGGAACTTTAAGTTGGCCTCTAGGCTTCTGGGATTGGATTCAAAGCTTGAGAAAAGTTTACTGATTCCATTCAGGGAAATCAAGgcacgtaaaattgcttcttgtgtgttttcatgtccttgttctggcaaaattagtttacttgtttt-cactatactgtttca-tatagttcaccaactctagttctaaataaatgtttcacaataatgcag
  ||||||| |||||||| ||||| ||| | || ||||||||||| || || || |||||||| ||||||||| | || ||||| ||||| || |||||||  ||         || |  | ||||||| | | |    | |  || |  |     ||   |      | | |   ||| |    |  | ||||||| | |                             
TTTAGCAGCAACCAACAGAAACTTCAAGCTTGCTTCTAGGCTTCTTGGTTTAGACTCAAAGCTCGAGAAAAGTCTTCTCATTCCCTTCAGAGAGATCAAGgttcgatg------ttttcctctgttttcttcttccatctataacagatctgcagaaccgatccggttcaagatcatttgaacggaactaaccaactattgcag--------------------------

upper sequence: GLYMA16G04560.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv08s0007g07400.t01 (Vitis vinifera), 5'ss of exon 3
ACTAGCAGCCACCAACAGGAACTTTAAGTTGGCCTCTAGGCTTCTGGGATTGGATTCAAAGCTTGAGAAAAGTTTACTGATTCCATTCAGGGAAATCAAGgcacgtaaaattgcttcttgtgtgttttcatgtccttgttctggcaaaattagtttacttgttttcactatactgtttcatatagttcaccaactctagttctaaataaatgtttcacaataatgcag
| | |  || |||||| | ||||||||| ||||  || | ||| |||| ||||| ||||||||||| || |||||||| || || || |||||||||||||   | |  | |  || || | | |||     | ||  || ||  ||  ||  |  |||  |   ||    | | ||  | ||  ||     | |    ||                           
ATTGGTGGCAACCAACCGAAACTTTAAGCTGGCAGCTCGCCTTTTGGGGTTGGACTCAAAGCTTGAAAAGAGTTTACTCATCCCGTTTAGGGAAATCAAGgtcagaatgactcttttttttttttttctgatttctaattttgtaaatgttgttgaactgttcagcagagaaatcttggaaatcattgttttaat--gattt--------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4397421|gb|AI496418.1|AI496418
EST:     TGGATTCAAAGCTTGAGAAAAGTTTGCTGATTCCATTCAGGGAAATCAAG                         GTTGAATGTACCATACCTAAAGATGATGGCACGTTGCAATCTTATGTTGGG
genomic: TGGATTCAAAGCTTGAGAAAAGTTTACTGATTCCATTCAGGGAAATCAAGgcacgtaaaa ... aataatgcagGTTGAATGTACCATACCTAAAGATGATGGCACCTTGCAATCTTATGTAGGG
EST: gi|10847674|gb|BF070321.1|BF070321
EST:     TGGATTCAAAGCTTGAGAAAAGTTTACTGATTCCATTCAGGGAAATCAAG                         GTTGAATGTACCATACCTAAAGATGATGGCACCTTGCAATCTTATGTAGGG
genomic: TGGATTCAAAGCTTGAGAAAAGTTTACTGATTCCATTCAGGGAAATCAAGgcacgtaaaa ... aataatgcagGTTGAATGTACCATACCTAAAGATGATGGCACCTTGCAATCTTATGTAGGG