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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCTGAGAGAGAATTTAAAGTAGAGGTAGAAGCAATTGGTCGTGTGCGGCACAAGAATCTTGTTAGGTTGCTTGGATACTGTGTTGAGGGGGAATACAGgtattttttttttttttttttcattttgaacattgaagctataaagtttgtttagtttaaagaatgtaagatttgaactttgaagtatgtattcaatgttcatattgcag

Basic information

species Glycine max
transcript GLYMA16G03650.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G03650.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G014366_T03 (Zea mays), 5'ss of exon 2
AAGCTGAGAGAGAATTTAAAGTAGAGGTAGAAGCAATTGGTCGTGTGCGGCACAAGAATCTTGTTAGGTTGCTTGGATACTGTGTTGAGGGGGAATACAGgtat-------tttttttttttttttttcattttgaacattgaagctataaagtttgtttag--tttaaagaatgtaagatttgaactttgaagtatgtattcaatgttcatattgcag
| || ||||  || || || || ||||| ||||||||||||||||| |||||||| ||||| || ||||||||||| ||||| || || || |  |||||||||       | ||  | | | || ||||||  |  |  |||  |  ||   |  |||| |  | | || |||| |||   |||    ||     |||  || ||| |   |  |   
AGGCCGAGAAGGAGTTCAAGGTGGAGGTCGAAGCAATTGGTCGTGTTCGGCACAAAAATCTCGTCAGGTTGCTTGGTTACTGCGTAGAAGGTGCTTACAGgtatgatggcatattgctatctcttcttcattcggtccggtgacacc-tactctcagtttggattctcaataatggaag-cctgattcctgtcac-tgtcgtctatgcttgaacag---

upper sequence: GLYMA16G03650.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv15s0046g02030.t01 (Vitis vinifera), 5'ss of exon 2
AAGCTGAGAGAGAATTTAAAGTAGAGGTAGAAGCAATTGGTCGTGTGCGGCACAAGAATCTTGTTAGGTTGCTTGGATACTGTGTTGAGGGGGAATACAGgtattttttttttttttttttcattttgaacattgaagctataaagtttgtttagtttaaagaat--gtaagatttgaactttgaagtatgtattcaatgttcatattgcag
|||||||||  ||||| ||||| ||||| ||||| || || || || |||||||||||||||||||||||||| |||||||||| |||||| |  ||||||||||  |     | || |       | ||   |||  ||      | |      |  ||| ||     |   ||| | |||| |  | | | ||   |||  |        
AAGCTGAGAAGGAATTCAAAGTGGAGGTTGAAGCCATAGGCCGGGTCCGGCACAAGAATCTTGTTAGGTTGCTGGGATACTGTGCTGAGGGAGCTTACAGgtattgctacccatcttct-----gctaaatcctgacactgggttttcttgaggatccaaaaaactaacattttttcatctttcatttgttttttttttgtctag-------