Sequence
atgc intronic sequence ATGC exonic sequenceCAATGTTCAATCTCTCCACTGTCATTAAAAGGAGTCAAGGATGCTGGATATGAGAAAATGACAGTTGTGCAGGAGGCTACTCTTCCAGTAATTCTCAAAGgttagtcttttttcattgacatggaggatggagcaatttgaaagaaaacaatcttaaggcataatgtcttttttttcttcttctggttacgttctgcctg...
Basic information
species | Glycine max |
transcript | GLYMA16G02880.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G02880.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G156158_T01 (Zea mays), 5'ss of exon 2
CAATGTTCAATCTCTCCACTGTCATTAAAAGGAGTCAAGGATGCTGGATATGAGAAAATGACAGTTGTGCAGGAGGCTACTCTTCCAGTAATTCTCAAAGgttagt--cttttttcattgacatggaggatggagc--aatttgaaagaaaacaatcttaaggcataatgtcttttttttcttcttctggttacgttctgcctg
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CAATGTGCCATTTCTCCACTGTCACTGAAAGCCATCAAAGATGCTGGATATGAGAGGATGACTCGGGTGCAGGAGGCTACTCTGCCAATAATTCTTCAAGgtcaggaactcaggatacatgcctaaacactacagctaaatccctgatatcaatatcttgggacctttaaactaacatttgagtttttttttctgcag------
upper sequence: GLYMA16G02880.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G08610.1 (Arabidopsis thaliana), 5'ss of exon 2
CAATGTTCAATCTCTCCACTGTCATTAAAAGGAGTCAAGGATGCTGGATATGAGAAAATGACAGTTGTGCAGGAGGCTACTCTTCCAGTAATTCTCAAAGgttagtcttttttcattgacatggaggatggagcaatttgaaagaaaacaatcttaaggcataatgtcttttttttcttcttctggttacgttctgcctg--
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CAATTCCCACTCTCTCCCTTATCGCTAAAAGCCATCAAGGATGCGGGATTTGAGACAATGACTGTTGTGCAGGAGGCTACTCTTCCTATCATTCTCCAAGgtgaacttttcttcatgagccttgtttacgatgcaaaaagaaaaaatgccatgatttaga--aatgtagtgacaatttctaattgacgacatctcacaagct
upper sequence: GLYMA16G02880.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G08620.1 (Arabidopsis thaliana), 5'ss of exon 2
CAATGTTCAATCTCTCCACTGTCATTAAAAGGAGTCAAGGATGCTGGATATGAGAAAATGACAGTTGTGCAGGAGGCTACTCTTCCAGTAATTCTCAAAGgttagtcttttttcattgacatggaggatggagcaatttgaaagaaaaca--atcttaaggcat------aatgtctt-----ttttttcttcttctggttac-gttctgcctg----------
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CAGTTCCCACTGTCTCCCTTAACGTTAAAAGGAATTGAGGATGCTGGATTTAAGACAATGACTGTTGTTCAGGAGGCTACTCTTCCTCTCATTCTCCAAGgtgaa-cttgcctaaaaggcagaaacttttgcatctttcttcatgattccttatgttttgtcatgacttaaacattttgaagcttgactattcctctattaattattcttccttggttttccag
upper sequence: GLYMA16G02880.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G63630.1 (Arabidopsis thaliana), 5'ss of exon 4
CAATGTTCAATCTCTCCACTGTCATTAAAAGGAGTCAAGGATGCTGGATATGAGAAAATGACAGTTGTGCAGGAGGCTACTCTTCCAGTAATTCTCAAAGgt--tagtcttttttcattgacatggaggatggagcaatttgaaagaaaacaatcttaaggcataatgtcttttttttcttcttctggttacgttct-gcctg-
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CACTATCCATTGTCTCCCTTATCGCTAAAGGCAATCAAGGATGCTGGATACGAGACAATGACTGTTGTTCAGGAAGCTACTCTCCCTATAATTCTCAAAGgtatttgttttttttctttt-cgtttcttatggtgctcattggatcaa--caatgcagaaaca-aataacacaatgatttagaaatggtgactctctagtctct
upper sequence: GLYMA16G02880.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv15s0046g01010.t01 (Vitis vinifera), 5'ss of exon 3
CAATGTTCAATCTCTCCACTGTCATTAAAAGGAGTCAAGGATGCTGGATATGAGAAAATGACAGTTGTGCAGGAGGCTACTCTTCCAGTAATTCTCAAAGgttagtcttttt-tcattgacatggaggatggagcaatttgaaagaaaacaatcttaaggcataatgtcttttttttcttcttctggttacgttctgcctg
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CAATGTCCAATCTCTCCATTGTCATTAAAAGCAATCAAAGATGCAGGGTATGAGAAGATGACTGTGGTTCAGGAGGCAACCCTTCCTGTCATCCTCAAAGgtttgtttgtctatgaccttcggagaagggtttctgaattgaagctatatcttgtttgtattcacaggtttttttcagattgagtactaacacagcagtg-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|20498840|gb|BQ273770.1|BQ273770EST: TGAGAAAATGACAGTTGTGCAGGAGGCTACTCTTCCAGTAATTCTCAAAG GTAAGGATGTCCTTGCCAAGGCCAAGACAGGCACCGGAAAAACAGTAGCCT
genomic: TGAGAAAATGACAGTTGTGCAGGAGGCTACTCTTCCAGTAATTCTCAAAGgttagtcttt ... acatttttagGTAAGGATGTCCTTGCCAAGGCCAAGACAGGCACCGGAAAAACAGTAGCCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAATGTTCAATCTCTCCACTGTCATTAAAAGGAGTCAAGGATGCTGGATATGAGAAAATGACAGTTGTGCAGGAGGCTACTCTTCCAGTAATTCTCAAAGgttagtcttttttcattgacatggaggatggagcaatttgaaagaaaacaatcttaaggcataatgtcttttttttcttcttctggttacgttctgcctg
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