1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TCCCTGTATCCACTCCTCGTCAGGGAAGATCTGAAGCAGTGCTAGCTGCTCACGTCCTGTAATGGACGCATACTCCTCCGGCGAAGAAGTGGTTGTTAAGgttagagttattgtgatatatatggggaagtttctcactttctcgtgaaagtgagttagtaaagttttggtactgttgtctgatgagtggttaagtggctttttgcag
species | Glycine max |
transcript | GLYMA16G01980.4 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CACGTCCTGTAATGGACGCATACTCCTCCGGCGAAGAAGTGGTTGTTAAG ACTAGAAAACCATATACAATCACTAAGCAAAGGGAACGATGGACAGAGGAGEST: gi|5606400|gb|AI900554.1|AI900554
genomic: CACGTCCTGTAATGGACGCATACTCCTCCGGCGAAGAAGTGGTTGTTAAGgttagagtta ... ctttttgcagACTAGAAAACCATATACAATCACTAAGCAAAGGGAACGATGGACAGAGGAG
EST: CACGTCCTGTAATGGACGCATACTCCTCCGGCGAAGAAGTGGTTGCTAAG ACTAGAAAACCATATACAATCACTAAGCAAAGGGAACGATGGACAGAGGAG
genomic: CACGTCCTGTAATGGACGCATACTCCTCCGGCGAAGAAGTGGTTGTTAAGgttagagtta ... ctttttgcagACTAGAAAACCATATACAATCACTAAGCAAAGGGAACGATGGACAGAGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCCTGTATCCACTCCTCGTCAGGGAAGATCTGAAGCAGTGCTAGCTGCTCACGTCCTGTAATGGACGCATACTCCTCCGGCGAAGAAGTGGTTGTTAAGgttagagttattgtgatatatatggggaagtttctcactttctcgtgaaagtgagttagtaaagttttggtactgttgtctgatgagtggttaagtggctttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT