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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTAACAACATGCCTTATTGGGCAGCATGTGGAAGTCCAGGTGAAAAATGGATCTATATACTCTGGAATATTTCATGCAACAAATTCTGACAAAGATTTTGgtatgttctgttatgcttgtgtaattgatttgatgatattgagggcaataatattttttgtattgtagtgcttaattgattccagcttccagttttcattattatatttatggatcttacagaatttgacattttttactgcttatgtcatcattactgttctcttag

Basic information

species Glycine max
transcript GLYMA16G00780.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G00780.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os02g27950.1 (Oryza sativa), 5'ss of exon 3
TTAACAACATGCCTTATTGGGCAGCATGTGGAAGTCCAGGTGAAAAATGGATCTATATACTCTGGAATATTTCATGCAACAAATTCTGACAAAGATTTTGgtatgttctgttatgcttgtgtaattgatttgatgatattgagggcaataatattttttgtattgtagtgcttaattgattccagcttccagttttcattattatatttatggatcttacagaatttgacattttttactgcttatgtcatcattactgttctcttag
 |    |||   |||||||| || |||||||| || || ||||||||||| |||||   ||| |||||  | ||||||||||| ||||||||||| || ||||       |   ||||   ||  | || ||    || |                |||| ||  |     ||| ||  ||   || |     |     || |||| | ||       |   | | ||| |||||||   |         |    | |||| |  |||
GTTTTGACACAACTTATTGGACAACATGTGGATGTGCATGTGAAAAATGGCTCTATTATCTCCGGAATCCTACATGCAACAAACTCTGACAAAGACTTAGgtaa--caaatctcgcttccatatgttatctggcattact----------------tttgaatcct----tttattttcttttggcata----tcctggtactatactgattagagggagcaagtgtgatattttttttggtcataactcttgagagtgtttttgtag

upper sequence: GLYMA16G00780.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM5G829738_T01 (Zea mays), 5'ss of exon 3
TTAACAACATGCCTTATTGGGCAGCATGTGGAAGTCCAGGTGAAAAATGGATCTATATACTCTGGAATATTTCATGCAACAAATTCTGACAAAGATTTTGgta-tgttctgttatgcttgtgtaattgatttgatgatattgagggcaataatattttttgtattgtagtgcttaattgattccagcttccagttttcattattatatttatggatcttacagaatttgacattttttactgcttatgtcatcattactgttctcttag
 |   ||||   ||||||||||| |||||||| || || ||||| || || ||||||  ||||||||| || |||||||||||  |||||||||| ||||||| |  ||| || |  ||    | ||  |   ||    || | |        ||  |||  | | |  |  || |           ||     ||  |||   ||||| ||  |      |   |      | |  ||| |                           
GTTCTAACACAACTTATTGGGCATCATGTGGACGTGCATGTGAATAACGGCTCTATAATCTCTGGAATTTTCCATGCAACAAACCCTGACAAAGACTTTGgtactcctctatttttttttctcagttcctgacatagcttttatga-------atcctttacagttttctatttgagcaccgtt--tttgtgaattgtattggcatattcattcaatacttaacttcaagattctcctacag---------------------------

upper sequence: GLYMA16G00780.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G056773_T01 (Zea mays), 5'ss of exon 3
TTAACAACATGCCTTATTGGGCAGCATGTGGAAGTCCAGGTGAAAAATGGATCTATATACTCTGGAATATTTCATGCAACAAATTCTGACAAAGATTTTGgtatgttctgttatgcttgtgtaattgatttgatgatattgagggcaataatattttttgtattgtagtgcttaattgattccagcttccagttttcattattatatttatggatcttacagaatttgacatt-ttttactgcttatgtcatcattactgttctcttag
 |   ||||   ||||||||||| |||||  | || || ||||||||||| ||||||   |||||||| || ||||||||||| ||||||||||| || ||||        |||   | | |  |   ||   |||  | |     || |||    |||  | | |  |  |  |      |    | |    ||  ||| | |||||  |     ||    | ||  | ||| |  ||| |                           
GTTCTAACACAACTTATTGGGCATCATGTCAACGTGCATGTGAAAAATGGCTCTATAATATCTGGAATTTTCCATGCAACAAACTCTGACAAAGACTTCGgtacacctc--tatctcttttttctcagttcc-tgacgtagcttttaagaat--cctttaaagttttctattcgagca---ctgtttcctgaattgtattgtcatattcctttcaattcttaacttcaagattctcctacag---------------------------

upper sequence: GLYMA16G00780.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv09s0002g01560.t01 (Vitis vinifera), 5'ss of exon 3
TTAACAACATGCCTTATTGGGCAGCATGTGGAAGTCCAGGTGAAAAATGGATCTATATACTCTGGAATATTTCATGCAACAAATTCTGACAAAGATTTTGgtatgttctgttatgcttgtgtaattgatttgatgatattgagggcaataatattttttgtattgtagtgcttaattgattccagct-tccagttttcattattatatttatggatcttacagaatttgacattttttactgcttatgtcatcattactgttctcttag
|||||||||||  ||||||| |  |  |||||||||||||| |||||||||||||||   |||||||||||||||||||||||  ||||||| ||||| |||||| |     | | ||    |||||  |   |   ||         |  ||||  ||   |||   | |||     || | |||  | | |||||||    | |  | ||  |  ||  || |||  || ||  | |   |||                        
TTAACAACATGTTTTATTGGACTTCCCGTGGAAGTCCAGGTCAAAAATGGATCTATAATTTCTGGAATATTTCATGCAACAAACGCTGACAAGGATTTCGgtatggttcaaga-gattacacaattg--tcccttgcatcataatt--ttgtattggttcccttgaccttctttcaaaatccaagcaattctgttttcagccatttgctcataaaggttttagcattc-actttgctcataacttgcag--------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6502437|gb|AW203810.1|AW203810
EST:     ATCTATATACTCTGGAATATTTCATGCAACAAATTCTGACAAAGATTTTG                         GAATCATTTTGAAAATGGCTCGCTTGACAAAGGCTGCCTCTTTGCAAGGAC
genomic: ATCTATATACTCTGGAATATTTCATGCAACAAATTCTGACAAAGATTTTGgtatgttctg ... gttctcttagGAATCATTTTGAAAATGGCTCGCTTGACAAAGGCTGCCTCTTTGCAAGGAC