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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGCACCTTTGATGTCTCTGTGCTCGAGGTTGGTGATGGAGTGTTTGAGGTCCTCTCTACTTCTGGTGACACCCACTTGGGTGGTGATGACTTTGATAAGgtacctttccccttctttcttctcttgtcttgtcttgtctttagtagtgtgagtaatgaatgattttcttttttacttgctaactgcttgtttcctattatag

Basic information

species Glycine max
transcript GLYMA16G00410.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G00410.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os12g14070.1 (Oryza sativa), 5'ss of exon 3
CGGCACCTTTGATGTCTCTGTGCTCGAGGTTGGTGATGGAGTGTTTGAGGTCCTCTCTACTTCTGGTGACACCCACTTGGGTGGTGATGACTTTGATAAGgtacctttccccttctttcttctcttgtcttgtcttgtctttagtagtgtgagtaatgaatgattttcttttt-tacttgctaactgcttgtttcctattatag
                    |  | |||||||| ||||| ||||||||||| || || || ||||||||||| ||| | ||||| |||||||| |||||||||  |    || | ||| || |   |       ||  ||   |  |  |    | |     ||||  |     ||| |   ||||| | |     | || || 
--------------------TATTGGAGGTTGGAGATGGTGTGTTTGAGGTGCTTTCCACATCTGGTGACACACACCTTGGTGGCGATGACTTCGATAAGgtatgtaattccatttttatttttaag----agattaactactgccgaatctccattttggaatttcgtgaaaatacatcgcaactgttcgaactgttttctat

upper sequence: GLYMA16G00410.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G001500_T01 (Zea mays), 5'ss of exon 3
CGGCACCTTTGATGTCTCTGTGCTCGAGGTTGGTGATGGAGTGTTTGAGGTCCTCTCTACTTCTGGTGACACCCACTTGGGTGGTGATGACTTTGATAAGgtacctttccccttctttcttctcttgtcttgtcttgtctttagtagtgtgagtaatgaatgattttcttttttacttgctaactgcttgtttcctattatag-
                    |  | || ||||||||||| ||||||||||| || || || ||||||||||| ||| | |||||||||||||| ||||||||          ||  ||||  |||| | | ||   |  | |   |  |  | |  ||||   | |        ||    |   |  |||| |  | |||||  
--------------------TATTGGAAGTTGGTGATGGTGTGTTTGAGGTGCTTTCCACATCTGGTGACACACACCTTGGTGGTGATGACTTCGATAAGgtttgacagaattttgttctgttcttttttagta--ggttgttacacggcaact--tgaactttctcaacacgcaccattttgttctttgtatgttgttataag

upper sequence: GLYMA16G00410.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv17s0000g03310.t01 (Vitis vinifera), 5'ss of exon 3
CGGCACCTTTGATGTCTCTGTGCTCGAGGTTGGTGATGGAGTGTTTGAGGTCCTCTCTACTTCTGGTGACACCCACTTGGGTGGTGATGACTTTGATAAGgt-----accttt----------------------------ccccttctttcttctcttgtcttgtcttgtctttagtagt-gtgagtaatgaatgattttcttttttacttgctaactgcttgtttcctattatag-----------
                    | ||||||||||| || |||||||||||||| || || ||||| || || || || ||||||||||| |||||||| |||||     |  |||                            | | || | |||||| | ||  | |||  |  |   ||        ||||    | ||||  ||  |    || ||    || |    | |  ||            
--------------------TTCTCGAGGTTGGCGACGGAGTGTTTGAGGTGCTTTCCACTTCAGGAGATACACATTTGGGTGGTGACGACTTTGACAAGgttgagaatatttgaatagcctgcaatgaacaatgttatgtcacattttgtcttctttagttctctctctttctctctatccacatctaatattaggttttgattggttagagcaaatcatttatcatttgtcttaccattcaaacag