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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCCATCTATATTGCTTATCATGATGAGGAATGGGGAGTTCCAGTTCATGATGACAAgtaagccaccacttctttctttttctgtcacacacacaacacatcacagtgtcacaccaaacacaaatgcataatgatgatgactgacaaaaacactgttctcaatccag

Basic information

species Glycine max
transcript GLYMA15G41940.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G41940.1 (Glycine max), 5'ss of exon 2
lower sequence: AT3G12710.1 (Arabidopsis thaliana), 5'ss of exon 2
ATCCCATCTATATTGCTTATCATGATGAGGAATGGGGAGTTCCAGTTCATGATGACAAgtaagccac-cacttctttctttttctgtcacacacacaacacatcacagtgtcacaccaaacacaaatgcataatgatgatgactgacaaaaacactgttctcaatccag
|||| || ||  | || || |||||||| |||||||||||||||||||||||||||||||  |  ||  | ||  | ||| ||     |   | ||  ||    ||| |    ||       ||||   | | |  | |||    |     |                 
ATCCTATTTACGTGGCCTACCATGATGAAGAATGGGGAGTTCCAGTTCATGATGACAAgtgcgtgacataattaatacttctttccaaatgaaaacgtcattgtacattagttcattttgttcaaaattaaattagttatgttaaattttcag----------------

upper sequence: GLYMA15G41940.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ21172 (Selaginella moellendorffii), 5'ss of exon 2
ATCCCATCTATATTGCTTATCATGATGAGGAATGGGGAGTTCCAGTTCATGATGACAAgtaagccaccacttctttctttttctgtcacacacacaacacatcacagtgtcacaccaaacacaaatgcataatgatgatgactgacaaaaacactgttctcaatccag
||||  || || ||||||| |||||  | |||||||||||||| |||||| ||||||||||||  |||| || | | | | | | |   | |    ||  ||   | | |    |||                                                   
ATCCAGTCAATGTTGCTTACCATGACCATGAATGGGGAGTTCCTGTTCATAATGACAAgtaaga-accatttttatttctattt-ttttaaatgtgacttatttaaat-tgcttccag--------------------------------------------------

upper sequence: GLYMA15G41940.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ29796 (Selaginella moellendorffii), 5'ss of exon 1
-------ATCCCATCTATATTGCTTATCATGATGAGGAATGGGGAGTTCCAGTTCATGATGACAAgtaag--ccaccactt------ctttctttttctgtcacacacacaacaca------tcacagtgtcacaccaaacacaaatgcataatgatgatgactga-caaaaacactgttctcaatccag------------------
       |||||   || || || |||||||| || |||||||||||||| || || |||||||||||||  |     | |      |||| ||||  | |  |   | |    |       |     |||  |    |       |      || || |||   | |      | | ||  |  ||||                   
AATGCAGATCCCGCGTACATCGCCTATCATGACGAAGAATGGGGAGTTCCTGTGCACGATGACAAgtaagagctggatcctgttgagctttattttagtattgcttgctcgttgctgttcctttgagttgttgctttcactgtttctatgagttgttgctgatccatctggtttattttttcctttccacttggtggtgttgatgcag

upper sequence: GLYMA15G41940.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ08943 (Selaginella moellendorffii), 5'ss of exon 1
-ATCCCATCTATATTGCTTATCATGATGAGGAATGGGGAGTTCCAGTTCATGATGACAAgtaag--ccaccactt------ctttctttttctgtcacacacacaacacatcac------agtgtcacaccaaacacaaatgcataatgatgatgactga-caaaaacactgttctcaatccag------------------
 |||||   || || || |||||||| || |||||||||||||| || || |||||||||||||  |     | |      |||| ||||  | |  |   | |    |    |        |||  |    |       |  |   || || |||   | |      | | ||  |  ||||                   
GATCCCGCGTACATCGCCTATCATGACGAAGAATGGGGAGTTCCTGTGCACGATGACAAgtaagagctggatcctgttgagctttattttagtattgcttgctcgttgctgttcctatgagttgttgctttcactgttcctataagttgttgctgatccatctggtttattttttcctttccacttggtggtgttgatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9440205|gb|BE440714.1|BE440714
EST:     TATATTGCTTATCATGATGAGGAATGGGGAGTTCCAGTTCATGATGACAA                         GATGCTGTTTGAACTTTTAGTTTTGAGCGGTGCTCAAGTTGGATCTGATTG
genomic: TATATTGCTTATCATGATGAGGAATGGGGAGTTCCAGTTCATGATGACAAgtaagccacc ... ctcaatccagGATGCTGTTTGAACTTTTAGTTTTGAGCGGTGCTCAAGTTGGATCTGATTG