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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTGACTTTGGTGGAAACTAAAGACTAGTCAAAATGgtaagtcgatggagagtgatacatgatttttatttatttcctttggttgaatgttcatgctctgaattgagatttctctatttttgcag

Basic information

species Glycine max
transcript GLYMA15G40860.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209701700|gb|BW673147.1|BW673147
EST:     CTTTGACTTTGGTGGAAACTAAAGACTAGTCAAAATG                         GTGAAGTTCACAGCTGAAGAGCTGCGTCGCATTATGGACTATAAGCATAAT
genomic: CTTTGACTTTGGTGGAAACTAAAGACTAGTCAAAATGgtaagtcgat ... atttttgcagGTGAAGTTCACAGCTGAAGAGCTGCGTCGCATTATGGACTATAAGCATAAT
EST: gi|209720081|gb|BW659468.1|BW659468
EST:     CTTTGACTTTGGTGGAAACTAAAGACTAGTCAAAATG                         GTGAAGTTCACAGCTGAAGAGCTGCGTCGCATTATGGACTATAAGCATAAT
genomic: CTTTGACTTTGGTGGAAACTAAAGACTAGTCAAAATGgtaagtcgat ... atttttgcagGTGAAGTTCACAGCTGAAGAGCTGCGTCGCATTATGGACTATAAGCATAAT
EST: gi|9986901|gb|BE661009.1|BE661009
EST:     CTCTTTCAGCTTTGACTTTGGTGGAAACTAAAGACTAGTCAAAATG                         GTGAAGTTCACAGCTGAAGAGCTGCGTCGCATTATGGACTATAAGCATAAT
genomic: CTCTTTCAGCTTTGACTTTGGTGGAAACTAAAGACTAGTCAAAATGgtaagtcgat ... atttttgcagGTGAAGTTCACAGCTGAAGAGCTGCGTCGCATTATGGACTATAAGCATAAT
EST: gi|209721069|gb|BW666330.1|BW666330
EST:     CTTTGACTTTGGTGGAAACTAAAGACTAGTCAAAATG                         GTGAAGTTCACAGCTGAAGAGCTGCGTCGCATTATGGACTATAAGCATAAT
genomic: CTTTGACTTTGGTGGAAACTAAAGACTAGTCAAAATGgtaagtcgat ... atttttgcagGTGAAGTTCACAGCTGAAGAGCTGCGTCGCATTATGGACTATAAGCATAAT
EST: gi|213591384|gb|DB959898.1|DB959898
EST:     CTTTGACTTTGGTGGAAACTAAAGACTAGTCAAAATG                         GTGAAGTTCACAGCTGAAGAGCTGCGTCGCATTATGGACTATAAGCATAAT
genomic: CTTTGACTTTGGTGGAAACTAAAGACTAGTCAAAATGgtaagtcgat ... atttttgcagGTGAAGTTCACAGCTGAAGAGCTGCGTCGCATTATGGACTATAAGCATAAT
EST: gi|193579539|gb|FK537680.1|FK537680
EST:     CTTTGACTTTGGTGGAAACTAAAGACTAGTCAAAATG                         GTGAAGTTCACAGCTGAAGAGCTGCGTCGCATTATGGACTATAAGCATAAT
genomic: CTTTGACTTTGGTGGAAACTAAAGACTAGTCAAAATGgtaagtcgat ... atttttgcagGTGAAGTTCACAGCTGAAGAGCTGCGTCGCATTATGGACTATAAGCATAAT
EST: gi|213593027|gb|DB973500.1|DB973500
EST:     CTTTGACTTTGGTGGAAACTAAAGACTAGTCAAAATG                         GTGAAGTTCACAGCTGAAGAGCTGCGTCGCATTATGGACTATAAGCATAAT
genomic: CTTTGACTTTGGTGGAAACTAAAGACTAGTCAAAATGgtaagtcgat ... atttttgcagGTGAAGTTCACAGCTGAAGAGCTGCGTCGCATTATGGACTATAAGCATAAT
EST: gi|213614873|gb|DB956981.1|DB956981
EST:     CTTTGACTTTGGTGGAAACTAAAGACTAGTCAAAATG                         GTGAAGTTCACAGCTGAAGAGCTGCGTCGCATTATGGACTATAAGCATAAT
genomic: CTTTGACTTTGGTGGAAACTAAAGACTAGTCAAAATGgtaagtcgat ... atttttgcagGTGAAGTTCACAGCTGAAGAGCTGCGTCGCATTATGGACTATAAGCATAAT
EST: gi|209719269|gb|BW679811.1|BW679811
EST:     CTTTGACTTTGGTGGAAACTAAAGACTAGTCAAAATG                         GTGAAGTTCACAGCTGAAGAGCTGCGTCGCATTATGGACTATAAGCATAAT
genomic: CTTTGACTTTGGTGGAAACTAAAGACTAGTCAAAATGgtaagtcgat ... atttttgcagGTGAAGTTCACAGCTGAAGAGCTGCGTCGCATTATGGACTATAAGCATAAT
EST: gi|298170535|gb|HO019159.1|HO019159
EST:     CTTTGACTTTGGTGGAAACTAAAGACTAGTCAAAATG                         GTGAAGTTCACAGCTGAAGAGCTGCGTCGCATTATGGACTATAAGCATAAT
genomic: CTTTGACTTTGGTGGAAACTAAAGACTAGTCAAAATGgtaagtcgat ... atttttgcagGTGAAGTTCACAGCTGAAGAGCTGCGTCGCATTATGGACTATAAGCATAAT
EST: gi|254347673|gb|GR853922.1|GR853922
EST:     CTTTGACTTTGGTGGAAACTAAAGACTAGTCAAAATG                         GTGAAGTTCACAGCTGAAGAGCTGCGTCGCATTATGGACTATAAGCATAAT
genomic: CTTTGACTTTGGTGGAAACTAAAGACTAGTCAAAATGgtaagtcgat ... atttttgcagGTGAAGTTCACAGCTGAAGAGCTGCGTCGCATTATGGACTATAAGCATAAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTTGACTTTGGTGGAAACTAAAGACTAGTCAAAATGgtaagtcgatggagagtgatacatgatttttatttatttcctttggttgaatgttcatgctctgaattgagatttctctatttttgcag

- - - -  TGGTGG
- - - - - GGTGGA