1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTCCTCTAAGGAAATTAACTTCCCTTATCCTTTGGGCTTGACTCTACTTCACATGGTCTTCTCCTCTGTTCTGTGTTTTGTGTTAACCAAGATTCTGAAGgtacgggtttgagcttggtgtattttgttatttaatcagttactgtcatgcaatgcaggttaatgatctgtttcttacag
species | Glycine max |
transcript | GLYMA15G40160.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACATGGCCTTCTCCTCTGTTCTGTGTTTTGTGTTAACCAAGATTCTGAAG GTTATGAAGGTTGAGGAGGGAATGACTCCTGAAATEST: gi|213597725|gb|DB964173.1|DB964173
genomic: ACATGGTCTTCTCCTCTGTTCTGTGTTTTGTGTTAACCAAGATTCTGAAGgtacgggttt ... tttcttacagGTTATGAAGGTTGAGGAGGGAATGACTCCTGAAAT
EST: ACATGGTCTTCTCCTCTGTTCTGTGTTTTGTGTTAACCAAGATTCTGAAG GTTATGAAGGTTGAGGAGGGAATGACTCCTGAAATEST: gi|15287909|gb|BI471800.1|BI471800
genomic: ACATGGTCTTCTCCTCTGTTCTGTGTTTTGTGTTAACCAAGATTCTGAAGgtacgggttt ... tttcttacagGTTATGAAGGTTGAGGAGGGAATGACTCCTGAAAT
EST: ACATGGTCTTCTCCTCTGTTCTGTGTTTTGTGTTAACCAAGATTCTGAAG GTTATGAAGGTTGAGGAGGGAATGACTCCTGAAATEST: gi|7640658|gb|AW734955.1|AW734955
genomic: ACATGGTCTTCTCCTCTGTTCTGTGTTTTGTGTTAACCAAGATTCTGAAGgtacgggttt ... tttcttacagGTTATGAAGGTTGAGGAGGGAATGACTCCTGAAAT
EST: ACATGGTCTTCTCCTCTGTTCTGTGTTTTGTGTTAACCAAGATTCTGAAG GTTATGAAGGTTGAGGAGGGAATGACTCCTGAAAT
genomic: ACATGGTCTTCTCCTCTGTTCTGTGTTTTGTGTTAACCAAGATTCTGAAGgtacgggttt ... tttcttacagGTTATGAAGGTTGAGGAGGGAATGACTCCTGAAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCCTCTAAGGAAATTAACTTCCCTTATCCTTTGGGCTTGACTCTACTTCACATGGTCTTCTCCTCTGTTCTGTGTTTTGTGTTAACCAAGATTCTGAAGgtacgggtttgagcttggtgtattttgttatttaatcagttactgtcatgcaatgcaggttaatgatctgtttcttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG