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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTGGGGTCACGCTTGGTCCCAAGGGAAGGAATGTTGTTCTCGAAAGCAAGTACGGCTCGCCGAAAATCGTTAACGACGGTGTCACCGTCGCCAAAGAGgtgagttttttaatttcgtcatattattattatggctgtttattttttggaatttaaagcaattttaaagtagttattttaaaaaccatcaaacttatga...

Basic information

species Glycine max
transcript GLYMA15G40110.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G40110.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G133698_T03 (Zea mays), 5'ss of exon 3
GGTTGGGGTCACGCTTGGTCCCAAGGGAAGGAATGTTGTTCTCGAAAGCAAGTACGGCTCGCCGAAAATCGTTAACGACGGTGTCACCGTCGCCAAAGAGgtgagtt----ttttaatttcgtcatattattattatggctgtttattttttggaatttaaagcaattt-taaagtagttattttaaaaaccatcaaacttatga-------------------------------------------
                        |||||||||||||||| | || |||||||| || || || ||||| |||||||| ||||| || || |||| ||||||    |    | |||   | ||  || |   | | ||  || | |  |  |  | |  | | |  | | || | |  ||  |  ||      ||| || | |                                             
------------------------GGGAAGGAATGTTGTTTTGGAGAGCAAGTATGGTTCTCCTAAAATTGTTAACGATGGTGTTACAGTTGCCAGAGAGGTACAGTGCAATGTTACCATGGTTgtacttagaatttgattgct-agctcgtaaattacataacgttgtatatatttttttctccaattcttgtcatacatgttttacaggtcatattcttataacccatgtaatgcatatactttag

upper sequence: GLYMA15G40110.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv06s0004g00240.t01 (Vitis vinifera), 5'ss of exon 3
GGTTGGGGTCACGCTTGGTCCCAAGGGAAGGAATGTTGTTCTCGAAAGCAAGTACGGCTCGCCGAAAATCGTTAACGACGGTGTCACCGTCGCCAAAGAGgtgagttttttaatttcgtcatattattattatggctg--tttattttttggaatttaaagcaattttaaagtagttattt-taaaaaccatcaaacttatga
 || || || || |||||||| || || ||||||||||| || || |||||||| ||||| || ||||| ||||| || ||||| || || |||||||||||  ||   | | ||   | |  || || | |   ||   |||  |||||  | || ||         ||   ||     | |||      ||||  |     
AGTGGGAGTTACTCTTGGTCCAAAAGGCAGGAATGTTGTCCTAGAGAGCAAGTATGGCTCCCCAAAAATTGTTAATGATGGTGTAACTGTGGCCAAAGAGgtatgt---taagttctattaattttttttaagttctagttttgcttttttaagttgaatatggaacaaagccagcaggctataagttttgtcaatttctctt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10846882|gb|BF069733.1|BF069733
EST:     AGTACGGCTCGCCGAAAATCGTTAACGACGGTGTCACCGTCGCCAAAGAG                         GTTGAGTTGGAGGATCCGGTTGAGAATATTGGCGCCAAGTTGGTGAGACAA
genomic: AGTACGGCTCGCCGAAAATCGTTAACGACGGTGTCACCGTCGCCAAAGAGgtgagttttt ... atttgggaagGTTGAGTTGGAGGATCCGGTTGAGAATATTGGCGCCAAGTTGGTGAGACAA
EST: gi|22541364|gb|BU091207.1|BU091207
EST:     AGTACGGCTCGCCGAAAATCGTTAACGACGGTGTCACCGTCGCCAAAGAG                         GTTGAGTTGGAGGATCCGGTTGAGAATATTGGCGCCAAGTTGGTGAGACAA
genomic: AGTACGGCTCGCCGAAAATCGTTAACGACGGTGTCACCGTCGCCAAAGAGgtgagttttt ... atttgggaagGTTGAGTTGGAGGATCCGGTTGAGAATATTGGCGCCAAGTTGGTGAGACAA
EST: gi|4292240|gb|AI437734.1|AI437734
EST:     AGTACGGCTCGCCGAAAATCGTTAACGACGGTGTCACCGTCGCCAAAGAG                         GTTGAGTTGGAGGATCCGGTTGAGAATATTGGCGCCAAGTTGGTGAGACAA
genomic: AGTACGGCTCGCCGAAAATCGTTAACGACGGTGTCACCGTCGCCAAAGAGgtgagttttt ... atttgggaagGTTGAGTTGGAGGATCCGGTTGAGAATATTGGCGCCAAGTTGGTGAGACAA
EST: gi|7926195|gb|AW832221.1|AW832221
EST:     AGTACGGCTCGCCGAAAATCGTTAACGACGGTGTCACCGTCGCCAAAGAG                         GTTGAGTTGGAGGATCCGGTTGAGAATATTGGCGCCAAGTTGGTGAGACAA
genomic: AGTACGGCTCGCCGAAAATCGTTAACGACGGTGTCACCGTCGCCAAAGAGgtgagttttt ... atttgggaagGTTGAGTTGGAGGATCCGGTTGAGAATATTGGCGCCAAGTTGGTGAGACAA
EST: gi|213599108|gb|DB962215.1|DB962215
EST:     AGTACGGCTCGCCGAAAATCGTTAACGACGGTGTCACCGTCGCCAAAGAG                         GTTGAGTTGGAGGATCCGGTTGAGAATATTGGCGCCAAGTTGGTGAGACAA
genomic: AGTACGGCTCGCCGAAAATCGTTAACGACGGTGTCACCGTCGCCAAAGAGgtgagttttt ... atttgggaagGTTGAGTTGGAGGATCCGGTTGAGAATATTGGCGCCAAGTTGGTGAGACAA