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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGAGGATTCACCAGGATTCTGCATTCTGGAAATCCTGACAACTTGATGAATGAAATTCCTACTGTTGTGGTTGATCCCCTTCCAGCAGGTTTGGACCGGgtgagtttactgcaactttacattgtattttttatatgttgtttgctaattccctattttattcaactgattggctttgtagtttataatatttttgttg...

Basic information

species Glycine max
transcript GLYMA15G37490.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G37490.2 (Glycine max), 5'ss of exon 2
lower sequence: AT5G13500.1 (Arabidopsis thaliana), 5'ss of exon 2
GGGAGGATTCACCAGGATTCTGCATTCTGGAAATCCTGACAACTTGATGAATGAAATTCCTACTGTTGTGGTTGATCCCCTTCCAGCAGGTTTGGACCGGgtgagtttactgcaactttacattgtattttttatatgttgtttgctaattccctattttattcaactgattggct-----ttgtagt-ttataatatttttgttg-
||| || |||||| | ||| ||||||| || ||| |||| ||||||||| ||||||| || ||  ||||||||||||| |||||  ||||| | || ||||| ||   | |   | ||||       || |  || || |  |  ||  ||    ||  | |   |||||||  ||     ||||| | || |||| || |  ||  
GGGTGGCTTCACCCGTATTTTGCATTCCGGTAATTCTGATAACTTGATGGATGAAATACCCACATTTGTGGTTGATCCTCTTCCTCCAGGTCTTGATCGGgtaaga--atttttattttattcccgtttctccatttggt-ctcactttttgttgatggtttatcactgattcactcttttttgtaatcttgtaatcttgtatttag

upper sequence: GLYMA15G37490.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv13s0084g00830.t01 (Vitis vinifera), 5'ss of exon 1
GGGAGGATTCACCAGGATTCTGCATTCTGGAAATCCTGACAACTTGATGAATGAAATTCCTACTGTTGTGGTTGATCCCCTTCCAGCAGGTTTGGACCGGgtgag------tttactgcaactttacattgtattttttatatgttgtttgctaattccctattttattcaactgattggctttgtagtttataatatttttgttg
||||||||| || |||||||||||||| |||| |||||| ||| ||||| | || ||||||||| ||||||||||||| ||||| ||||||||||| ||||||||      | | |||  | | |||||  | |  ||  ||| || |||| |   |  |    || ||  |  | |||  || | |  ||  ||      |    
GGGAGGATTTACAAGGATTCTGCATTCAGGAAGTCCTGATAACCTGATGGAAGAGATTCCTACTTTTGTGGTTGATCCTCTTCCTGCAGGTTTGGATCGGgtgagaaatcttcttctgttattatacatc-tttgcttcttatattctttgttgtataacggcattctttta--ggttg--ttggaaaattgcaagcaagctcca-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207787696|gb|GD761494.1|GD761494
EST:     ATGAAATTCCTACTGTTGTGGTTGATCCCCTTCCAGCAGGTTTGGACCGG                         G-ATACATTGTTTTGAATAGGCCATGGGACCTTTAGTTCAGTGGCT
genomic: ATGAAATTCCTACTGTTGTGGTTGATCCCCTTCCAGCAGGTTTGGACCGGgtgagtttac ... ctgtttgcagGGATACATTGTTTTGAATAGGCCATGGG-CCTTT-GTTCAGTGGCT
EST: gi|192294296|gb|FG986385.1|FG986385
EST:     ATGAAATTCCTACTGTTGTGGTTGATCCCCTTCCAGCAGGTTTGGACCGG                         GGATACATTGTTTTGAATAGGCCATGGGCCTTTGTTCAGTGGCTGGAAAAG
genomic: ATGAAATTCCTACTGTTGTGGTTGATCCCCTTCCAGCAGGTTTGGACCGGgtgagtttac ... ctgtttgcagGGATACATTGTTTTGAATAGGCCATGGGCCTTTGTTCAGTGGCTGGAAAAG