Sequence
atgc intronic sequence ATGC exonic sequenceATCCCATCTATATTGCTTATCATGATGAAGAATGGGGAGTTCCAGTTCATGATGACAAgtaagcccctactttactcttttcccatggcagacaaatacaattaagaccccgcataaacttctcaataagtacttgcataaaaagaaaataacaagtt...
Basic information
species | Glycine max |
transcript | GLYMA15G30150.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G30150.1 (Glycine max), 5'ss of exon 2
lower sequence: AT3G12710.1 (Arabidopsis thaliana), 5'ss of exon 2
ATCCCATCTATATTGCTTATCATGATGAAGAATGGGGAGTTCCAGTTCATGATGACAAgtaagcccc-tactttactcttttcccatggcagacaaatacaattaagaccccgcataaacttctcaataagtacttgcataaaaagaaaataacaagtt
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ATCCTATTTACGTGGCCTACCATGATGAAGAATGGGGAGTTCCAGTTCATGATGACAAgtgcgtgacataattaatacttctttccaaatga--aaacgtcattgt-acattagttcattttgttcaaaattaaattagttatgttaaattttcag---
upper sequence: GLYMA15G30150.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ21172 (Selaginella moellendorffii), 5'ss of exon 2
ATCCCATCTATATTGCTTATCATGATGAAGAATGGGGAGTTCCAGTTCATGATGACAAgtaagcccctactttactcttttcccatggcagacaaatacaattaagaccccgcataaacttctcaataagtacttgcataaaaagaaaataacaagtt
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ATCCAGTCAATGTTGCTTACCATGACCATGAATGGGGAGTTCCTGTTCATAATGACAAgtaagaaccatttttatttctatttttttaaatgtgactt--atttaaattgcttccag-----------------------------------------
upper sequence: GLYMA15G30150.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ29796 (Selaginella moellendorffii), 5'ss of exon 1
-------ATCCCATCTATATTGCTTATCATGATGAAGAATGGGGAGTTCCAGTTCATGATGACAAgtaagc------ccctactttactcttttcc--catggcagacaaata------caattaagaccccgcataaact-tctcaataagtacttgcataaaaagaaaataacaagtt----------------------------
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AATGCAGATCCCGCGTACATCGCCTATCATGACGAAGAATGGGGAGTTCCTGTGCACGATGACAAgtaagagctggatcctgttgagctttattttagtattgcttgctcgttgctgttcctttgagttgttgctttcactgtttctatgagttgttgctgatccatctggtttattttttcctttccacttggtggtgttgatgcag
upper sequence: GLYMA15G30150.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ08943 (Selaginella moellendorffii), 5'ss of exon 1
-ATCCCATCTATATTGCTTATCATGATGAAGAATGGGGAGTTCCAGTTCATGATGACAAgtaagcccctactttactcttttcccatggcagacaaatacaattaagacc--ccgcataaacttct-caataagtacttgcataaaaagaaaataacaagtt----------------------------------------
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GATCCCGCGTACATCGCCTATCATGACGAAGAATGGGGAGTTCCTGTGCACGATGACAAgtaagagctggatcctgttgagctttattttagtattgcttgctcgttgctgttcctatgagttgttgctttcactgttcctataagttgttgctgatccatctggtttattttttcctttccacttggtggtgttgatgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9258973|gb|BE347120.1|BE347120EST: TATATTGCTTATCATGATGAAGAATGGGGAGTTCCAGTTCATGATGACAA GATGTTGTTTGAACTTCTAGTTCTAAGTGGTGCTCAGGTTGGATCAGATTG
genomic: TATATTGCTTATCATGATGAAGAATGGGGAGTTCCAGTTCATGATGACAAgtaagcccct ... gtgcatacagGATGTTGTTTGAACTTCTAGTTCTAAGTGGTGCTCAGGTTGGATCAGATTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATCCCATCTATATTGCTTATCATGATGAAGAATGGGGAGTTCCAGTTCATGATGACAAgtaagcccctactttactcttttcccatggcagacaaatacaattaagaccccgcataaacttctcaataagtacttgcataaaaagaaaataacaagtt
- - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccctac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagaaaa