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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTCGTGCATCCTCTAAAGGGTTGACTCTTGAACTTTGCCGTTGGATTGGTAAAGATAGTGTAAAATCAATTTTGTTTGAGACAATGAGAGACACAATGgtaagctaaactagttgtctatttttgttgttgttttgatttgttatgttctcctccatatccaaatcttagagtacctttttccccatttctgtag

Basic information

species Glycine max
transcript GLYMA15G29520.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G29520.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv10s0116g00490.t01 (Vitis vinifera), 5'ss of exon 5
TGTTCGTGCATCCTCTAAAGGGTTGACTCTTGAACTTTGCCGTTGGATTGGTAAAGATAGTGTAAAATCAATTTTGTTTGAGACAATGAGAGACACAATGgtaagctaaactagttgtctatttttgttgttgttttgatttgttatgttctcctccatatccaaatcttagagtacctttttccccatttctgtag
|||||||||||||||||||||  |||| ||||| || || |||||||| || |||||    || ||||||||||||||||||| |||| | || |||||||||   ||||    |    ||   | ||| |   ||| |     | | |  | ||   |    ||||     | |   |||||||   |  |   ||
TGTTCGTGCATCCTCTAAAGGACTGACACTTGAGCTCTGTCGTTGGATAGGGAAAGACCCAGTGAAATCAATTTTGTTTGAGAAAATGCGGGATACAATGgtataataaatgtttaaaatagcct-gttttc--tttaacgaagtttatatttctatttcctgaaataaattattttttttttccttgtgacataag

upper sequence: GLYMA15G29520.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S131_18V6.1 (Physcomitrella patens), 5'ss of exon 5
TGTTCGTGCATCCTCTAAAGGGTTGACTCTTGAACTTTGCCGTTGGATTGGTAAAGATAGTGTAAAATCAATTTTGTTTGAGACAATGAGAGACACAATGgtaagctaaactagttgtctatttttgttgttgttttgatttgttatgttc---tcctccatatccaaatcttagagtacctttttccccatttctgtag----------------------------------------------------------------------
|||| | || | | | |||||||| ||| ||||||||||||| |||||||| ||||||  ||||||     || | ||||| |  ||| | || || ||||| |||     ||   |  |||||     | ||| ||  || | | | |     |||  |   | ||||  |  | |||   ||||    ||| | | ||                                                                      
TGTTAGAGCCTGCGCGAAAGGGTTAACTATTGAACTTTGCCGGTGGATTGGAAAAGATGCTGTAAAGAACCTTCTTTTTGATAAGATGCGTGATACCATGgtgagcctcg-tatgcgaatatttgcaa-gctgtcttccttagatctatgtgaatccgtcgatttcaaagat--gtgtattattttgttgattcccggagagttccacccgtgggtaggttcaggatatgatgaataacattcattttgttcgcgtggtctttctttcag