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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTTCAAACCAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAGgtaatgcttctgaacaatagctttcttgttgcattctttgtttgattgatgcctcaattagtacttttagaataaataaaaataagaaagtaaaataaat...

Basic information

species Glycine max
transcript GLYMA15G20970.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37996596|gb|CF808185.1|CF808185
EST:     CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAG                         CTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
genomic: CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAGgtaatgcttc ... ggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
EST: gi|254324640|gb|GR834065.1|GR834065
EST:     CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAG                         CTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
genomic: CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAGgtaatgcttc ... ggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
EST: gi|254323403|gb|GR835904.1|GR835904
EST:     CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAG                         CTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
genomic: CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAGgtaatgcttc ... ggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
EST: gi|308098995|gb|HO760836.1|HO760836
EST:     CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAG                         CTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
genomic: CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAGgtaatgcttc ... ggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
EST: gi|254342299|gb|GR853436.1|GR853436
EST:     CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAG                         CTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
genomic: CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAGgtaatgcttc ... ggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
EST: gi|6846739|gb|AW349029.1|AW349029
EST:     TGCAGTAGCTTCTGCGTTTGCTNGACATAAGGAAG                         CTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
genomic: TGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAGgtaatgcttc ... ggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
EST: gi|254331328|gb|GR843340.1|GR843340
EST:     CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAG                         CTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
genomic: CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAGgtaatgcttc ... ggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
EST: gi|254340958|gb|GR854686.1|GR854686
EST:     CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAG                         CTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
genomic: CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAGgtaatgcttc ... ggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
EST: gi|308098529|gb|HO760270.1|HO760270
EST:     CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAG                         CTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
genomic: CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAGgtaatgcttc ... ggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
EST: gi|254342298|gb|GR853435.1|GR853435
EST:     CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAG                         CTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
genomic: CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAGgtaatgcttc ... ggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
EST: gi|254325822|gb|GR838703.1|GR838703
EST:     CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAG                         CTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
genomic: CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAGgtaatgcttc ... ggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
EST: gi|254332005|gb|GR843748.1|GR843748
EST:     CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAG                         CTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
genomic: CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAGgtaatgcttc ... ggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
EST: gi|254313721|gb|GR831350.1|GR831350
EST:     CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAG                         CTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
genomic: CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAGgtaatgcttc ... ggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
EST: gi|254332006|gb|GR843749.1|GR843749
EST:     CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAG                         CTATACAGCAAAGGGA-CACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
genomic: CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAGgtaatgcttc ... ggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
EST: gi|254340959|gb|GR854687.1|GR854687
EST:     CAAGAATGGAACTG-TGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAG                         CTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
genomic: CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAGgtaatgcttc ... ggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
EST: gi|23728332|gb|BU762218.1|BU762218
EST:     CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAG                         CTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
genomic: CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAGgtaatgcttc ... ggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
EST: gi|254344502|gb|GR851199.1|GR851199
EST:     CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAG                         CTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
genomic: CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAGgtaatgcttc ... ggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
EST: gi|254341719|gb|GR852856.1|GR852856
EST:     CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAG                         CTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
genomic: CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAGgtaatgcttc ... ggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
EST: gi|23730432|gb|BU763306.1|BU763306
EST:     GTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAG                         CTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
genomic: GTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAGgtaatgcttc ... ggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
EST: gi|308097867|gb|HO761038.1|HO761038
EST:     CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGACG                         CTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
genomic: CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAGgtaatgcttc ... ggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
EST: gi|254325823|gb|GR838704.1|GR838704
EST:     TTGCTGGACATAAGGAAG                         CTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
genomic: TTGCTGGACATAAGGAAGgtaatgcttc ... ggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
EST: gi|5606005|gb|AI900103.1|AI900103
EST:     CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAG                         CTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
genomic: CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAGgtaatgcttc ... ggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGTTCAAACCAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAGgtaatgcttctgaacaatagctttcttgttgcattctttgtttgattgatgcctcaattagtacttttagaataaataaaaataagaaagtaaaataaat

- - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaataaa