1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AAAGTTGTGCCGTGCTGCCAGTAAGAAATCAAAGAGCATTCACTGTCATTGCTCTGAGTGCTCGCGGTCCGGGAAGTACCATAAATCGATATTCAAGAGGgtgagatcattttctgctacgtgtatctcgttatttttcttaaatgattgcttggttatatacttgtgatatttaatatctaattctgtcttgacatctggtttctccttctgatttttgttctctttcccctttggttttgcag
species | Glycine max |
transcript | GLYMA15G20400.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AAGTACCATAAATCGATATTCAAGAGG ATTTCGAATGTCTCAACCTGTAGTAAACTTTAACATTGTTACTACTTTGGGEST: gi|208229889|gb|GE023790.1|GE023790
genomic: AAGTACCATAAATCGATATTCAAGAGGgtgagatcat ... ggttttgcagATTTCGAATGTCTCAACCTGTAGT-AACTTT-ACATTGTTACTACTTTGGG
EST: AAGTACCATAAATCGATATTCAAGAGG ATTTCGAATGTCTCAACCTGTAGTAACTTTACATEST: gi|192306292|gb|FG996878.1|FG996878
genomic: AAGTACCATAAATCGATATTCAAGAGGgtgagatcat ... ggttttgcagATTTCGAATGTCTCAACCTGTAGTAACTTTACAT
EST: GCTCTGAGTGCTCGCGGTCCGGGAAGTACCATAAATCGATATTCAAGAGG ATTTCGAATGTCTCAACCCGTAGTAACTTTACATTGTTACTACTTTGGGTGEST: gi|6724522|gb|AW308921.1|AW308921
genomic: GCTCTGAGTGCTCGCGGTCCGGGAAGTACCATAAATCGATATTCAAGAGGgtgagatcat ... ggttttgcagATTTCGAATGTCTCAACCTGTAGTAACTTTACATTGTTACTACTTTGGGTG
EST: GCTCTGAGTGCTCGCGGTCCGGGAAGTACCATAAATCGATATTCAAGAGG ATTTCGAATGTCTCAACCTGTAGTAACTTTACATTGTTACTACTTTGGGTG
genomic: GCTCTGAGTGCTCGCGGTCCGGGAAGTACCATAAATCGATATTCAAGAGGgtgagatcat ... ggttttgcagATTTCGAATGTCTCAACCTGTAGTAACTTTACATTGTTACTACTTTGGGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGTTGTGCCGTGCTGCCAGTAAGAAATCAAAGAGCATTCACTGTCATTGCTCTGAGTGCTCGCGGTCCGGGAAGTACCATAAATCGATATTCAAGAGGgtgagatcattttctgctacgtgtatctcgttatttttcttaaatgattgcttggttatatacttgtgatatttaatatctaattctgtcttgacatctggtttctccttctgatttttgttctctttcccctttggttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG