Sequence
atgc intronic sequence ATGC exonic sequenceATGCCTGCATTGCCTTCATATGGGTATGGAAGGGAGCATCCCGGTCCTCGATATAGTAGTTTAATTCATGGTCAAAATCTTGTAGATGTTGTCATAACAGgtaaggataaaaaaagtcattatcctctctcgaggacaactgtttttacttcaggatttagataattttttcttttaagaatttaattataagagaagaa...
Basic information
species | Glycine max |
transcript | GLYMA15G19820.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G19820.1 (Glycine max), 5'ss of exon 2
lower sequence: AT3G42950.1 (Arabidopsis thaliana), 5'ss of exon 2
ATGCCTGCATTGCCTTCATATGGGTATGGAAGGGAGCATCCCGGTCCTCGATATAGTAGTTTAATTCATGGTCAAAATCTTGTAGATGTTGTCATAACAGgtaaggataaaaaaagtcattatcctctctcgaggacaactgtttttacttcaggatttagataattttttcttttaagaatttaattataagagaagaa---
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CTTCCTCCTTTACCTTCATATGGATATGGAAGAGAGCATCATGGACCTCGTTATGGAAGTTTCATTCATGGACAGAATCTTAGAGATGTTGTTGTTACAGgttag--ttgattggtttgtgaattttgcttctggg-gactattcttgtgtttgcaatgtaactcttcttgtgtttgcattgtccttgttgagctttttaggc
upper sequence: GLYMA15G19820.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv11s0016g00720.t01 (Vitis vinifera), 5'ss of exon 2
ATGCCTGCATTGCCTTCATATGGGTATGGAAGGGAGCATCCCGGTCCTCGATATAGTAGTTTAATTCATGGTCAAAATCTTGTAGATGTTGTCATAACAGgtaaggataaaaaaagtcattatcctctctc-gaggacaactgtttttacttcaggatttagataattttttcttttaagaatttaattataagagaagaa--------
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ATGCCTCCCTTGCCTTCATATGGGTATGGGAGAGAGCATCGTGGAGCTCGATATGGGAGTTTGATTCATGGTCAAAATCTTAAGGATGTTGTTATAACAGgtcag------atatttcttccttttgccactgagttgaagtactattcctgttaaatggccaaagtgtagactt---ggatgttgactaaaaaatattcacatttgttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|10232121|gb|BE801009.1|BE801009EST: GTTTAATTCATGGTCAAAATCTTGTAGATGTTGTCATAACAG GCCACAATGGTACCATAAATGGACAGGGACAAACATGGTGGACAAAGTATC
genomic: GTTTAATTCATGGTCAAAATCTTGTAGATGTTGTCATAACAGgtaaggataa ... ttgtttacagGCCACAATGGTACCATAAATGGACAGGGACAAACATGGTGGACAAAGTATC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGCCTGCATTGCCTTCATATGGGTATGGAAGGGAGCATCCCGGTCCTCGATATAGTAGTTTAATTCATGGTCAAAATCTTGTAGATGTTGTCATAACAGgtaaggataaaaaaagtcattatcctctctcgaggacaactgtttttacttcaggatttagataattttttcttttaagaatttaattataagagaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctc