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AGCATAGCTCAAGTGACTGAAGCGACTTTGCAAGATTATGAGGAGGGATTGCAAGCTTGCAGTGAAGCAGCCAAGACATGGATGACTgtgagttttttgtttttaaaaaaagaacatttttttaatactttatttgggggggttattttttgtgttttagttacatggtagagttggtagatagtactgcatctatgtgttattggaagctaattgaaactaattgaggatgtgattgtaatgttattgcag
species | Glycine max |
transcript | GLYMA15G19670.3 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATGAGGAGGGATTGCAAGCTTGCAGTGAAGCAGCCAAGACATGGATGACT ATTCCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTGEST: gi|298176954|gb|HO026961.1|HO026961
genomic: ATGAGGAGGGATTGCAAGCTTGCAGTGAAGCAGCCAAGACATGGATGACTgtgagttttt ... gttattgcagATTCCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTG
EST: ATGAGGAGGGATTGCAAGCTTGCAGTGAAGCAGCCAAGACATGGATGACT ATTCCGGCACCGAAGAGAAGTGAGACTGTGAGACAGATTGGTGAAGCATTGEST: gi|208138184|gb|GD936818.1|GD936818
genomic: ATGAGGAGGGATTGCAAGCTTGCAGTGAAGCAGCCAAGACATGGATGACTgtgagttttt ... gttattgcagATTCCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTG
EST: ATGAGGAGGGATTGCAAGCTTGCAGTGAAGCAGCCAAGACATAGATGACT ATTCCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTGEST: gi|254315873|gb|GR825682.1|GR825682
genomic: ATGAGGAGGGATTGCAAGCTTGCAGTGAAGCAGCCAAGACATGGATGACTgtgagttttt ... gttattgcagATTCCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTG
EST: ATGAGGAGGGATTGCAAGCTTGCAGTGAAGCAGCCAAGACATGGATGACT ATTCCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTGEST: gi|193695881|gb|FK635655.1|FK635655
genomic: ATGAGGAGGGATTGCAAGCTTGCAGTGAAGCAGCCAAGACATGGATGACTgtgagttttt ... gttattgcagATTCCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTG
EST: ATGAGGAGGGATTGCAAGCTTGCAGTGAAGCAGCCAAGACATGGATGACT ATTCCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTGEST: gi|192296158|gb|FG989743.1|FG989743
genomic: ATGAGGAGGGATTGCAAGCTTGCAGTGAAGCAGCCAAGACATGGATGACTgtgagttttt ... gttattgcagATTCCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTG
EST: ATGAGGAGGGATTGCAAGCTTGCAGTGAAGCAGCCAAGACATGGATGACT ATTCCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTGEST: gi|192311335|gb|FK003792.1|FK003792
genomic: ATGAGGAGGGATTGCAAGCTTGCAGTGAAGCAGCCAAGACATGGATGACTgtgagttttt ... gttattgcagATTCCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTG
EST: ATGAGGAGGGATTGCAAGCTTGCAGTGAAGCAGCCAAGACATGGATGACT ATTCCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTGEST: gi|151412062|gb|EV281874.1|EV281874
genomic: ATGAGGAGGGATTGCAAGCTTGCAGTGAAGCAGCCAAGACATGGATGACTgtgagttttt ... gttattgcagATTCCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTG
EST: ATGAGGAGGGATTGCAAGCTTGCAGTGAAGTAGCCAAGACATGGATGACT ATTCCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTGEST: gi|15813460|gb|BI785735.1|BI785735
genomic: ATGAGGAGGGATTGCAAGCTTGCAGTGAAGCAGCCAAGACATGGATGACTgtgagttttt ... gttattgcagATTCCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTG
EST: ATGAGGAGGGATTGCAAGCTTGCAGTGAAGCAGCCAAGACATGGATGACT ATTCCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTGEST: gi|27446368|gb|CA953491.1|CA953491
genomic: ATGAGGAGGGATTGCAAGCTTGCAGTGAAGCAGCCAAGACATGGATGACTgtgagttttt ... gttattgcagATTCCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTG
EST: ATGAGGAGGGATTGCAAGCTTGCAGTGAAGCAGCCAAGACATGGATGACT ATTCCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTGEST: gi|254317668|gb|GR826652.1|GR826652
genomic: ATGAGGAGGGATTGCAAGCTTGCAGTGAAGCAGCCAAGACATGGATGACTgtgagttttt ... gttattgcagATTCCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTG
EST: ATGAGGAGGGATTGCAAGCTTGCAGTGAAGCAGCCAAGACATGGATGACT ATTCCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTGEST: gi|209718196|gb|BW657828.1|BW657828
genomic: ATGAGGAGGGATTGCAAGCTTGCAGTGAAGCAGCCAAGACATGGATGACTgtgagttttt ... gttattgcagATTCCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTG
EST: ATGAGGAGGGATTGCAAGCTTGCAGTGAAGCAGCCAAGACATGGATGACT ATTCCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTGEST: gi|13181628|gb|BG352968.1|BG352968
genomic: ATGAGGAGGGATTGCAAGCTTGCAGTGAAGCAGCCAAGACATGGATGACTgtgagttttt ... gttattgcagATTCCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTG
EST: ATGAGGAGGGATCGCAAGCTTGCAGTGAAGCAGCCAAGACATGGATGACT ATGCCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTG
genomic: ATGAGGAGGGATTGCAAGCTTGCAGTGAAGCAGCCAAGACATGGATGACTgtgagttttt ... gttattgcagATTCCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCATAGCTCAAGTGACTGAAGCGACTTTGCAAGATTATGAGGAGGGATTGCAAGCTTGCAGTGAAGCAGCCAAGACATGGATGACTgtgagttttttgtttttaaaaaaagaacatttttttaatactttatttgggggggttattttttgtgttttagttacatggtagagttggtagatagtactgcatctatgtgttattggaagctaattgaaactaattgaggatgtgattgtaatgttattgcag
- - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA