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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCATAGCTCAAGTGACTGAAGCGACTTTGCAAGATTATGAGGAGGGATTGCAAGCTTGCAGTGAAGCAGCCAAGACATGGATGACTgtgagttttttgtttttaaaaaaagaacatttttttaatactttatttgggggggttattttttgtgttttagttacatggtagagttggtagatagtactgcatctatgtgttattggaagctaattgaaactaattgaggatgtgattgtaatgttattgcag

Basic information

species Glycine max
transcript GLYMA15G19670.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G19670.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv09s0002g01010.t01 (Vitis vinifera), 5'ss of exon 2
AGCATAGCTCAAGTGACTGAAGCGACTTTGCAAGATTATGAGGAGGGATTGCAAGCTTGCAGTGAAGCAGCCAAGACATGGATGACTgtgagttttttgtttttaaaaaaagaacatttttttaatactttatttgggggggttattttttgtgttttagttacatggtagagttggtagatagtactgcatctatgtgttattggaagctaattgaaactaattgaggatgtgattgtaatgttattgcag
|  || |||   || || || |   |  |  ||||||||||||| ||  | |||||||||||| |||||||||||  ||||||||  ||||| |  |  | ||| | |    |    ||| |  ||  ||| ||        ||  |||||   | |  |     ||| | |  |  || |||||| | || ||   |  |           |||   |||   | ||                        
ACAATTGCTGCGGTTACGGAGGGTTCCATTGAAGATTATGAGGAAGGCATCCAAGCTTGCAGTAAAGCAGCCAAGCTATGGATGAAAgtgagatcatcatctttgagattt-attgctttctagattttttttt-------attcctttttaaatat--gccttctggaatatct--tacatagtattacaact-cataatgcatatgctgcattt--actgtctcag------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192311334|gb|FK003791.1|FK003791
EST:     ATGAGGAGGGATTGCAAGCTTGCAGTGAAGCAGCCAAGACATGGATGACT                         ATTCCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTG
genomic: ATGAGGAGGGATTGCAAGCTTGCAGTGAAGCAGCCAAGACATGGATGACTgtgagttttt ... gttattgcagATTCCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTG
EST: gi|298176954|gb|HO026961.1|HO026961
EST:     ATGAGGAGGGATTGCAAGCTTGCAGTGAAGCAGCCAAGACATGGATGACT                         ATTCCGGCACCGAAGAGAAGTGAGACTGTGAGACAGATTGGTGAAGCATTG
genomic: ATGAGGAGGGATTGCAAGCTTGCAGTGAAGCAGCCAAGACATGGATGACTgtgagttttt ... gttattgcagATTCCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTG
EST: gi|208138184|gb|GD936818.1|GD936818
EST:     ATGAGGAGGGATTGCAAGCTTGCAGTGAAGCAGCCAAGACATAGATGACT                         ATTCCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTG
genomic: ATGAGGAGGGATTGCAAGCTTGCAGTGAAGCAGCCAAGACATGGATGACTgtgagttttt ... gttattgcagATTCCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTG
EST: gi|254315873|gb|GR825682.1|GR825682
EST:     ATGAGGAGGGATTGCAAGCTTGCAGTGAAGCAGCCAAGACATGGATGACT                         ATTCCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTG
genomic: ATGAGGAGGGATTGCAAGCTTGCAGTGAAGCAGCCAAGACATGGATGACTgtgagttttt ... gttattgcagATTCCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTG
EST: gi|193695881|gb|FK635655.1|FK635655
EST:     ATGAGGAGGGATTGCAAGCTTGCAGTGAAGCAGCCAAGACATGGATGACT                         ATTCCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTG
genomic: ATGAGGAGGGATTGCAAGCTTGCAGTGAAGCAGCCAAGACATGGATGACTgtgagttttt ... gttattgcagATTCCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTG
EST: gi|192296158|gb|FG989743.1|FG989743
EST:     ATGAGGAGGGATTGCAAGCTTGCAGTGAAGCAGCCAAGACATGGATGACT                         ATTCCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTG
genomic: ATGAGGAGGGATTGCAAGCTTGCAGTGAAGCAGCCAAGACATGGATGACTgtgagttttt ... gttattgcagATTCCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTG
EST: gi|192311335|gb|FK003792.1|FK003792
EST:     ATGAGGAGGGATTGCAAGCTTGCAGTGAAGCAGCCAAGACATGGATGACT                         ATTCCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTG
genomic: ATGAGGAGGGATTGCAAGCTTGCAGTGAAGCAGCCAAGACATGGATGACTgtgagttttt ... gttattgcagATTCCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTG
EST: gi|151412062|gb|EV281874.1|EV281874
EST:     ATGAGGAGGGATTGCAAGCTTGCAGTGAAGTAGCCAAGACATGGATGACT                         ATTCCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTG
genomic: ATGAGGAGGGATTGCAAGCTTGCAGTGAAGCAGCCAAGACATGGATGACTgtgagttttt ... gttattgcagATTCCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTG
EST: gi|15813460|gb|BI785735.1|BI785735
EST:     ATGAGGAGGGATTGCAAGCTTGCAGTGAAGCAGCCAAGACATGGATGACT                         ATTCCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTG
genomic: ATGAGGAGGGATTGCAAGCTTGCAGTGAAGCAGCCAAGACATGGATGACTgtgagttttt ... gttattgcagATTCCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTG
EST: gi|27446368|gb|CA953491.1|CA953491
EST:     ATGAGGAGGGATTGCAAGCTTGCAGTGAAGCAGCCAAGACATGGATGACT                         ATTCCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTG
genomic: ATGAGGAGGGATTGCAAGCTTGCAGTGAAGCAGCCAAGACATGGATGACTgtgagttttt ... gttattgcagATTCCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTG
EST: gi|254317668|gb|GR826652.1|GR826652
EST:     ATGAGGAGGGATTGCAAGCTTGCAGTGAAGCAGCCAAGACATGGATGACT                         ATTCCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTG
genomic: ATGAGGAGGGATTGCAAGCTTGCAGTGAAGCAGCCAAGACATGGATGACTgtgagttttt ... gttattgcagATTCCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTG
EST: gi|209718196|gb|BW657828.1|BW657828
EST:     ATGAGGAGGGATTGCAAGCTTGCAGTGAAGCAGCCAAGACATGGATGACT                         ATTCCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTG
genomic: ATGAGGAGGGATTGCAAGCTTGCAGTGAAGCAGCCAAGACATGGATGACTgtgagttttt ... gttattgcagATTCCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTG
EST: gi|13181628|gb|BG352968.1|BG352968
EST:     ATGAGGAGGGATCGCAAGCTTGCAGTGAAGCAGCCAAGACATGGATGACT                         ATGCCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTG
genomic: ATGAGGAGGGATTGCAAGCTTGCAGTGAAGCAGCCAAGACATGGATGACTgtgagttttt ... gttattgcagATTCCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGCATAGCTCAAGTGACTGAAGCGACTTTGCAAGATTATGAGGAGGGATTGCAAGCTTGCAGTGAAGCAGCCAAGACATGGATGACTgtgagttttttgtttttaaaaaaagaacatttttttaatactttatttgggggggttattttttgtgttttagttacatggtagagttggtagatagtactgcatctatgtgttattggaagctaattgaaactaattgaggatgtgattgtaatgttattgcag

- - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA