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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCCCTTCCCAATTCCATTGGCTGCCTCTCTAAGCTCAAGGTTTTGAATGTCTCAGGCAACTTCATCGAATCCCTCCCCAAAACCATTGAGAATTGCAGgttccttcattttcatcacttctcttaatttctattttttatgatgataattaaatcatgaaattctggcaaattgcatatatatataattgaattaact...

Basic information

species Glycine max
transcript GLYMA15G18210.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G18210.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os04g51580.1 (Oryza sativa), 5'ss of exon 3
ACTCCCTTCCCAATTCCATTGGCTGCCTCTCTAAGCTCAAGGTTTTGAATGTCTCAGGCAACTTCATCGAATCCCTCCCCAAAACCATTGAGAATTGCAGgttccttcattttcatcacttctctta-atttctattttttatg-atgataattaaatcatgaaattctggcaaattgcatatatatataattgaattaact--
| || || ||||| ||||| ||||||||||| |||||||||||  | || ||||| |||||| |  |||| ||||||||||| ||||| ||| | ||| |||           |  | | |||| || ||  | ||    || | ||    |||     |   || ||     ||||  | | |   |||  ||  | |  |  
AATCGCTGCCCAACTCCATCGGCTGCCTCTCCAAGCTCAAGGTCCTCAACGTCTCCGGCAACCTGCTCGAGTCCCTCCCCAACACCATCGAGGAGTGCCGgtga----gccaccgccgcctctcctacataccaatcaactacggattgatattctccgacttaagtcacatgaatttaagacactgatatgtgggtcattttt

upper sequence: GLYMA15G18210.1 (Glycine max), 5'ss of exon 2
lower sequence: AT4G29880.1 (Arabidopsis thaliana), 5'ss of exon 2
ACTCCCTTCCCAATTCCATTGGCTGCCTCTCTAAGCTCAAGGTTTTGAATGTCTCAGGCAACTTCATCGAATCCCTCCCCAAAACCATTGAGAATTGCAGgttccttcattttcatcacttctct-taatttctattttttatgatgataattaaatcatgaaattctggcaaattgcatatatatataattgaattaact
|  | ||||| || |||||||| || || |||||||||||| |  | |||||||| ||||||||  |||  ||||||||| |||| ||| | ||||||||||| |  ||  |  | ||  |||     |   | ||  | ||||||||||||    | || || | ||  |   || | | | | |   |||         
AAGCTCTTCCAAACTCCATTGGTTGTCTTTCTAAGCTCAAGATCCTTAATGTCTCCGGCAACTTTCTCGTTTCCCTCCCCCAAACTATTCAAAATTGCAGgtttca-cacctcaaccaaatctggaccaaaccaatcatatatgatgataat--gctgataaattcct--ctgttttcttttgttttggattttccag---

upper sequence: GLYMA15G18210.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv11s0052g00390.t01 (Vitis vinifera), 5'ss of exon 2
ACTCCCTTCCCAATTCCATTGGCTGCCTCTCTAAGCTCAAGGTTTTGAATGTCTCAGGCAACTTCATCGAATCCCTCCCCAAAACCATTGAGAATTGCAGgttccttcattttcatcacttctcttaatttctattttttatgatgataattaaatcatgaaattctggcaaattgcatatatatataa--ttgaattaact--
| ||||| || || || ||||| || || || |||||||||||||||||  |||| || ||| ||||  ||  |||||||||||||||||| ||||||||||    |  |||||  | | |     |  |  |  | |        | | || |       | |||   ||      ||||   ||| |  ||  |  ||    
AATCCCTCCCAAACTCAATTGGGTGTCTTTCAAAGCTCAAGGTTTTGAACATCTCTGGGAACCTCATTCAAAACCTCCCCAAAACCATTGAAAATTGCAGgt----ttgttttctcctccttgtgcatctctttctataggcatcaacatttgatcttcttagttccaccatgagagatattcttatgaattttcacaaagaga

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192334553|gb|FK024484.1|FK024484
EST:     GTCTCAGGCAACTTCATCGAATCCCTCCCCAAAACCATTGAGAATTGCAG                         AGCCTTAGAAGAGCTGAATGCAAACTTCAACAAGCTGAGCAAGCTGCCAGA
genomic: GTCTCAGGCAACTTCATCGAATCCCTCCCCAAAACCATTGAGAATTGCAGgttccttcat ... gacctagcagAGCCTTAGAAGAGCTGAATGCAAACTTCAACAAGCTGAGCAAGCTGCCAGA