1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GAAGAAGCAGGAACTCGATGCCGCTAAGAAAATGAGGTTCGAAACGCGGAAGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAGgtattagaattaaaattataattgaatcttggagcgttggatttgttatgttttgttttcaatattgccatttttaaaaataatttctgtgttttctttttccag
species | Glycine max |
transcript | GLYMA15G18170.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAG CAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTTEST: gi|207692924|gb|GD675961.1|GD675961
genomic: AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAGgtattagaat ... ctttttccagCAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
EST: AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAG CAAAAGGAACTGATTAGGTTGAAGEST: gi|209702466|gb|BW667098.1|BW667098
genomic: AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAGgtattagaat ... ctttttccagCAAAAGGAACTGATTAGGTTGAAG
EST: AGCTGATTTTTAACACAGCCAAACAATACTCAAAGGAATACGACGAGCAG CAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTTEST: gi|17023603|gb|BM094637.1|BM094637
genomic: AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAGgtattagaat ... ctttttccagCAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
EST: AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAG CAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTTEST: gi|298195246|gb|HO043774.1|HO043774
genomic: AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAGgtattagaat ... ctttttccagCAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
EST: AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAG CAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
genomic: AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAGgtattagaat ... ctttttccagCAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGAAGCAGGAACTCGATGCCGCTAAGAAAATGAGGTTCGAAACGCGGAAGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAGgtattagaattaaaattataattgaatcttggagcgttggatttgttatgttttgttttcaatattgccatttttaaaaataatttctgtgttttctttttccag
- - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG