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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGAAGCAGGAACTCGATGCCGCTAAGAAAATGAGGTTCGAAACGCGGAAGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAGgtattagaattaaaattataattgaatcttggagcgttggatttgttatgttttgttttcaatattgccatttttaaaaataatttctgtgttttctttttccag

Basic information

species Glycine max
transcript GLYMA15G18170.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151410194|gb|EV280009.1|EV280009
EST:     AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAG                         CAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
genomic: AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAGgtattagaat ... ctttttccagCAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
EST: gi|192327716|gb|FK021351.1|FK021351
EST:     AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAG                         CAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
genomic: AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAGgtattagaat ... ctttttccagCAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
EST: gi|17023603|gb|BM094637.1|BM094637
EST:     AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAG                         CAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
genomic: AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAGgtattagaat ... ctttttccagCAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
EST: gi|192295535|gb|FG988109.1|FG988109
EST:     AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAG                         CAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
genomic: AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAGgtattagaat ... ctttttccagCAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
EST: gi|8282865|gb|BE020426.1|BE020426
EST:     AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAG                         CAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
genomic: AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAGgtattagaat ... ctttttccagCAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
EST: gi|207692924|gb|GD675961.1|GD675961
EST:     AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAG                         CAAAAGGAACTGATTAGGTTGAAG
genomic: AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAGgtattagaat ... ctttttccagCAAAAGGAACTGATTAGGTTGAAG
EST: gi|10232891|gb|BE801779.1|BE801779
EST:     AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAG                         CAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
genomic: AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAGgtattagaat ... ctttttccagCAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
EST: gi|58021409|gb|CX708150.1|CX708150
EST:     GATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAG                         CAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
genomic: GATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAGgtattagaat ... ctttttccagCAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
EST: gi|151400307|gb|EV270121.1|EV270121
EST:     AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAG                         CAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
genomic: AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAGgtattagaat ... ctttttccagCAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
EST: gi|58015969|gb|CX702711.1|CX702711
EST:     AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAG                         CAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
genomic: AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAGgtattagaat ... ctttttccagCAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
EST: gi|298195246|gb|HO043774.1|HO043774
EST:     AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAG                         CAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
genomic: AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAGgtattagaat ... ctttttccagCAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
EST: gi|209702466|gb|BW667098.1|BW667098
EST:     AGCTGATTTTTAACACAGCCAAACAATACTCAAAGGAATACGACGAGCAG                         CAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
genomic: AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAGgtattagaat ... ctttttccagCAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
EST: gi|33388304|gb|CA851511.1|CA851511
EST:     AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAG                         CAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
genomic: AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAGgtattagaat ... ctttttccagCAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
EST: gi|209728367|gb|BW660005.1|BW660005
EST:     AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAG                         CAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
genomic: AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAGgtattagaat ... ctttttccagCAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
EST: gi|192294770|gb|FG986619.1|FG986619
EST:     AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAG                         CAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
genomic: AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAGgtattagaat ... ctttttccagCAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
EST: gi|151404968|gb|EV274782.1|EV274782
EST:     AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAG                         CAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
genomic: AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAGgtattagaat ... ctttttccagCAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
EST: gi|151395296|gb|EV265167.1|EV265167
EST:     AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAG                         CAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
genomic: AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAGgtattagaat ... ctttttccagCAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
EST: gi|192307998|gb|FG998981.1|FG998981
EST:     AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAG                         CAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
genomic: AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAGgtattagaat ... ctttttccagCAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
EST: gi|58024451|gb|CX711192.1|CX711192
EST:     GATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAG                         CAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
genomic: GATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAGgtattagaat ... ctttttccagCAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
EST: gi|57574809|gb|CX547784.1|CX547784
EST:     AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAG                         CAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
genomic: AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAGgtattagaat ... ctttttccagCAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
EST: gi|192307999|gb|FG998982.1|FG998982
EST:     TTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAG                         CAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
genomic: TTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAGgtattagaat ... ctttttccagCAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAGAAGCAGGAACTCGATGCCGCTAAGAAAATGAGGTTCGAAACGCGGAAGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAGgtattagaattaaaattataattgaatcttggagcgttggatttgttatgttttgttttcaatattgccatttttaaaaataatttctgtgttttctttttccag

- - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG