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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGCTTCTGGGGATGCTGTTTGAGCGTGGGACATACAACAAGCTCTATAGCTATAGACACCTTATAAATGGGTTTGCAGTTCATCTTTCCCCAGAACAGgtgatgtctcgtattgttatctttttagtttttactgtgatttcgtttaataatagtatgttttgttgtttttgaacttcatgtaagcatgttttgtcctcttatattagtag

Basic information

species Glycine max
transcript GLYMA15G17830.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G17830.1 (Glycine max), 5'ss of exon 2
lower sequence: AT2G19170.1 (Arabidopsis thaliana), 5'ss of exon 3
CATGCTTCTGGGGATGCTGTTTGAGCGTGGGACATACAACAAGCTCTATAGCTATAGACACCTTATAAATGGGTTTGCAGTTCATCTTTCCCCAGAACAGgtgatgtctcgtattgttatc-tttttagtttttactgtgatttcgtttaataatagtatgttttgttgtttttgaacttcatgtaagcatgttttgtcctcttatattagtag
 ||| |||| |||||||| ||||||   ||  ||||||| ||||| || ||||||| ||||||||||||||| ||||||| |||| |||| || || |||||||    |||  ||   ||| ||| ||  |  | ||    |||| | |     ||   | |||   | | ||||                                       
TATGATTCTTGGGATGCTCTTTGAGGAAGGATCATACAAAAAGCTTTACAGCTATAAACACCTTATAAATGGATTTGCAGCTCATGTTTCTCCTGAGCAGgtgaaaaatcgatttcagatcatttctaaatagttcttaactttcatgttcccttacactatttcactatatttggtag-----------------------------------

upper sequence: GLYMA15G17830.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv11s0103g00550.t01 (Vitis vinifera), 5'ss of exon 3
CATGCTTCTGGGGATGCTGTTTGAGCGTGGGACATACAACAAGCTCTATAGCTATAGACACCTTATAAATGGGTTTGCAGTTCATCTTTCCCCAGAACAGgtgatgtctcgtattgttatctttttagtttttac-tgtgatttcgtttaataata-gtatgttttgttgtttttgaacttcatgtaagcatgttttgtcctctt-atattagtag------------------------------------------
|||||| ||   | |||||||||||| |||||| ||||| |||||||| |||||| | || ||||| ||||| |||||||||||| | ||||||||||||||||   || |     || | || ||  | || |  | |   |   | ||   |||  ||| | |   | | ||| ||  |  |  |   || || |||  |  | | |||| ||                                           
CATGCTCCTATCGTTGCTGTTTGAGCATGGGACTTACAAGAAGCTCTACAGCTATCGGCATCTTATTAATGGCTTTGCAGTTCATATATCCCCAGAACAGgtgaaaccttgggcaattcttttgttcttattcatatatatatatatatatatatatatatatatatatatattttaatgtt-tacagcaattttctgtattgatgacattactatctttgcattctcattttctaatgaatcccactatattagtag