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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGATTTGAGGGTAATACCGGTATCATTGTCATTGCAGCTACTAACAGGGTTGACATTCTTGATTCTGCATTGTTAAGGCCGGGACGATTTGATAGGCAGgtaagattatattagcaaattcttaatgcgtttattaacaagcaaatcagtgaacatagtgcttttgcag

Basic information

species Glycine max
transcript GLYMA15G17070.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G17070.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv12s0028g01600.t01 (Vitis vinifera), 5'ss of exon 2
TGGATTTGAGGGTAATACCGGTATCATTGTCATTGCAGCTACTAACAGGGTTGACATTCTTGATTCTGCATTGTTAAGGCCGGGACGATTTGATAGGCAGgtaag-------attatattagcaaattcttaatgcgtttattaacaa-gcaaatcagtgaacatagtgcttttg--cag
||| ||||| || || || ||||| ||||| |||||||| ||||||||||  ||||||||||| ||||| || || ||||| ||||||||||| || ||||||||       | ||||||      | | | || | |||||||  |  |  ||  | | |   ||  ||||| |  |||
TGGTTTTGAAGGAAACACTGGTATAATTGTTATTGCAGCCACTAACAGGGCAGACATTCTTGACTCTGCCTTATTGAGGCCTGGACGATTTGACAGACAGgtaagcatagagaatatattgttttttgccttat-cttttattataagtgggaaatacttacgttaaagctttggagcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16276816|gb|BI942059.1|BI942059
EST:     TTGACATTCTTGATTCTGCATTGGTAAGGCCCGGACGATTTGATAGGCAG                         GTCACGGNTGATGTTCCAGATATACGAGGAAGGACTGAAATTCTAAAGGTT
genomic: TTGACATTCTTGATTCTGCATTGTTAAGGCCGGGACGATTTGATAGGCAGgtaagattat ... gcttttgcagGTCACGGTTGATGTTCCAGATATACGAGGAAGGACTGAAATTTTAAAGGTT
EST: gi|15589623|gb|BI674239.1|BI674239
EST:     TTGACATTCTTGATTCTGCATTGTTAAGGCCGGGACGATTTGATAGGCAG                         GTCACGGTTGATGTTCCAGATATACGAGGAAGGACTGAAATTTTAAAGGTT
genomic: TTGACATTCTTGATTCTGCATTGTTAAGGCCGGGACGATTTGATAGGCAGgtaagattat ... gcttttgcagGTCACGGTTGATGTTCCAGATATACGAGGAAGGACTGAAATTTTAAAGGTT
EST: gi|15589803|gb|BI674419.1|BI674419
EST:     TTGACATTCTTGATTCTGCATTGTTAAGGCCGGGACGATTTGATAGGCAG                         GTCACGGTTGATGTTCCAGATATACGAGGAAGGACTGAAATTTTAAAGGTT
genomic: TTGACATTCTTGATTCTGCATTGTTAAGGCCGGGACGATTTGATAGGCAGgtaagattat ... gcttttgcagGTCACGGTTGATGTTCCAGATATACGAGGAAGGACTGAAATTTTAAAGGTT