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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCAACTTCCGGACCGCACGGTTGAACCGGTTCCGCCGCGTCTTCGCGCACGTCGCTCCGGTTTTCTTCGAGCGCGGCATTGCCAAGCCAGAAACCATGgttcgtcctaacaactctttaactgttaataacggttacttcttcgtagtgtggaagcgataactgtatcaatttttatttattttattgtgaaattgaaaacaagaaaaggaaaatttggaaggaatgttaataatgtgatgtttatgctgtgtgttgatggaaattttattag

Basic information

species Glycine max
transcript GLYMA15G16320.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G16320.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os05g29020.1 (Oryza sativa), 5'ss of exon 2
GGCCAACTTCCGGACCGCACGGTTGAACCGGTTCCGCCGCGTCTTCGCGCACGTCGCTCCGGTTTTCTTCGAGCGCGGCATTGCCAAGCCAGAAACCATGgttcgtcctaacaactctttaactgttaataacggttacttcttcgtagtgtggaagcgataactgtatcaatttttatttattttattgtgaaattgaaaacaagaaaaggaaaatttggaaggaatgttaataatgtgatgtttatgctgtgtgttgatggaaattttattag
||     ||||||   ||   | ||  | ||||||||||||||||||| |||  ||| ||| | ||||||||||||||||| ||||     |  |||| |||       |   ||||  |  ||  |  ||  |  | |  || |  | ||| || || | ||  | | |||     ||  |  |    ||  | |   | |  | |                                                                    
GGAGGGGTTCCGGGTGGCGGCGCTGCGCGGGTTCCGCCGCGTCTTCGCCCACTCCGCCCCGATCTTCTTCGAGCGCGGCATCGCCATCGAGGCCACCAAGgtc------agggactcagttgctactgttagagtgtgcg-ctgcagactgtagatgctaaaaa-gaagcaaaagaaatggagctacaagttgattaccatatgaaat-------------------------------------------------------------------

upper sequence: GLYMA15G16320.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv05s0077g01810.t01 (Vitis vinifera), 5'ss of exon 2
GGCCAACTTCCGGACCGCACGGTTGAACCGGTTCCGCCGCGTCTTCGCGCACGTCGCTCCGGTTTTCTTCGAGCGCGGCATTGCCAAGCCAGAAACCATGgttcgtcctaacaactctttaactgttaataacggttacttcttcgtagtgtggaagcgataactgtatcaatttttatttattttattgtgaaattgaaaacaagaaaaggaaaatttggaaggaatgttaataatgtgatgtttatgctgtgtgttgatggaaattttattag
   ||||||| |   |||| | |||||| | || ||||| |||||||| || ||  |||| |||||||| ||||||||||||||||| || || |||||||||  |   |||   |   |         || | ||  ||| |    |||                     |  | | |||  ||  |    ||| | |  | |  || |  ||||  |    |                                                   
AATCAACTTCAGAGTCGCAAGATTGAACGGATTTCGCCGTGTCTTCGCTCATGTTACTCCAGTTTTCTTTGAGCGCGGCATTGCCAAACCGGAGACCATGgttaatataaactcattcct---------tagcagtgccttttgtcaagtac----------------ctgacctctgtttggttgctgagaaaactcaggaaagtaataaaaaaaactaagggc--------------------------------------------------

upper sequence: GLYMA15G16320.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv05s0077g01800.t01 (Vitis vinifera), 5'ss of exon 2
GGCCAACTTCCGGACCGCACGGTTGAACCGGTTCCGCCGCGTCTTCGCGCACGTCGCTCCGGTTTTCTTCGAGCGCGGCATTGCCAAGCCAGAAACCATGgttcgtcctaacaactctttaactgttaataacggttacttcttcgtagtgtggaagcgataactgtatcaatttttatttattttattgtgaaattgaaaacaagaaaaggaaaatttggaaggaatgttaataatgtgatgtttatgctgtgtgttgatggaaattttattag
|   |||||| |    ||  | |||||| | || || || |||||||| || || |||||  |||| || ||||||||||| ||||| |||||||||||||||  |   |||   |   || | ||        |||  |  ||                ||||| |    |||| | |||  ||   || ||||||      ||    ||  |||||    |  ||| |                                             
GATGAACTTCAGAGTTGCGAGATTGAACAGCTTTCGACGTGTCTTCGCTCATGTTGCTCCAATTTTTTTTGAGCGCGGCATCGCCAAACCAGAAACCATGgttaatataaacttattcctagcagt--------gtttttcattt---------------taacttt----atttctgtttggtt-gctgagaaatttgggggaatgggag--aaattcttcaataatct---------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209708043|gb|BW657085.1|BW657085
EST:     TCGAGCGCGGCATTGCCAAGCCAGAAACCATG                         GAGATTTCCAGCTTGAGTGTGGAGCCATGTGAAGGAGAAACTCTTGTGGTG
genomic: TCGAGCGCGGCATTGCCAAGCCAGAAACCATGgttcgtccta ... attttattagGAGATTTCCAGCTTGAGTGTGGAGCCATGTGAAGGAGAAACTCTTGTGGTG
EST: gi|31307340|gb|CD392543.1|CD392543
EST:     ACGTCGCTCCGGTTTTCTTCGAGCGCGGCATTGCCAAGCCAGAAACCATG                         GAGATTTCCAGCTTGAGTGTGGAGCCATGTGAAGGAGAAACTCTTGTGGTA
genomic: ACGTCGCTCCGGTTTTCTTCGAGCGCGGCATTGCCAAGCCAGAAACCATGgttcgtccta ... attttattagGAGATTTCCAGCTTGAGTGTGGAGCCATGTGAAGGAGAAACTCTTGTGGTG
EST: gi|14991401|gb|BI317074.1|BI317074
EST:     CAGAAACCATG                         GAGATTTCCAGCTTGAGTGTGGAGCCATGTGAAGGAGAAACTCTTGTGGTA
genomic: CAGAAACCATGgttcgtccta ... attttattagGAGATTTCCAGCTTGAGTGTGGAGCCATGTGAAGGAGAAACTCTTGTGGTG
EST: gi|20207814|gb|BQ133903.1|BQ133903
EST:     ACGTCGCTCCGGTTTTCTTCGAGCGCGGCATTGCCAAGCCAGAAACCATG                         GAGATTTCCAGCTTGAGTGTGGAGCCATGTGAAGGAGAAACTCTTGTGGTG
genomic: ACGTCGCTCCGGTTTTCTTCGAGCGCGGCATTGCCAAGCCAGAAACCATGgttcgtccta ... attttattagGAGATTTCCAGCTTGAGTGTGGAGCCATGTGAAGGAGAAACTCTTGTGGTG