Sequence
atgc intronic sequence ATGC exonic sequenceGAGAGGTACAATGTGGAGAAAGACGTCGCGGAACAGATAAAGAAGGAGTTCGATAAGAGGCATGGCCCCACTTGGCATTGCATCGTTGGTCGTAATTTTGgtaactccctttttgttttttttccttgcatttgtcaatgattttggtatttgggtatacttggatttgtggtttgtgtgcttcttttatagtagaaatt...
Basic information
species | Glycine max |
transcript | GLYMA15G16060.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G16060.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G472231_T01 (Zea mays), 5'ss of exon 2
GAGAGGTACAATGTGGAGAAAGACGTCGCGGAACAGATAAAGAAGGAGTTCGATAAGAGGCATGGCCCCACTTGGCATTGCATCGTTGGTCGTAATTTTGgtaactccctttttgttttttttccttgcatttgtcaatgattttggtatttgggtatacttggatttgtggtttgtgtgct-tcttttatagtagaaatt-
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GAGAAGCACAGTATGGAGAAGGACATCGCGGAGTACATAAAGAAGGAGTTCGACAAGAACCACGGCCCCACCTGGCACTGCATCGTCGGCCGCAACTTCGgtaatgctcttctcccaaccccttatgggaaccctccttaatt--agtactgaatgattgcgcaagttgtggttggtgtctagtctgatatgcttgcgttgt
upper sequence: GLYMA15G16060.1 (Glycine max), 5'ss of exon 2
lower sequence: AT4G15930.1 (Arabidopsis thaliana), 5'ss of exon 2
GAGAGGTACAATGTGGAGAAAGACGTCGCGGAACAGATAAAGAAGGAGTTCGATAAGAGGCATGGCCCCACTTGGCATTGCATCGTTGGTCGTAATTTTGgtaactccctttttgtttttt--ttccttgcatttgtcaatgattttggtatttgggtatacttggatttgtggtttgtgtgcttcttttatagtagaaatt
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GAGAAGTACAGTGTGGAGAAGGATATAGCTGAGAATATAAAGAAGGAGTTTGACAAGAAACATGGTGCTACTTGGCATTGCATTGTTGGTCGCAACTTTGgttagttccctcctctccttcgcttaatttctccttaaggtggcatttttcgatgaaaagttctcagttagggaatagtg-atttcttagtaagtatatct-
upper sequence: GLYMA15G16060.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv05s0077g02110.t01 (Vitis vinifera), 5'ss of exon 2
GAGAGGTACAATGTGGAGAAAGACGTCGCGGAACAGATAAAGAAGGAGTTCGATAAGAGGCATGGCCCCACTTGGCATTGCATCGTTGGTCGTAATTTTGgtaactccctttttgttttttttccttgcatttgtcaatgattttggtatttgg-gtatacttggatttgtggtttgt--gtgcttcttttatagtagaaatt
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GAGAATCACAGTGTGGAGAAAAACATTGCGGAGTATATCAAGAAGGAGTTCGATAAGAAGCATGGACCTACCTGGCATTGCATTGTCGGTCGCAATTTCGgtaattcccgtttaatcatttttcttataatatat--gtaatatcaatttctactggatagattaattgatgaatcagcggtggtgttctgttgttacatat-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|22930439|gb|BU547578.1|BU547578EST: CGATAAGAGGCATGGCCCCACTTGGCATTGCATCGTTGGTCGTAATTTTG TGCATTCATGTACTTCTCTTGCTTTTTGCAGGTTCATATGTGACTCATGAA
genomic: CGATAAGAGGCATGGCCCCACTTGGCATTGCATCGTTGGTCGTAATTTTGgtaactccct ... atcattgaagTGCATTCATGTACTTCTCTTGCTTTTTGCAGGTTCATATGTGACTCATGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAGAGGTACAATGTGGAGAAAGACGTCGCGGAACAGATAAAGAAGGAGTTCGATAAGAGGCATGGCCCCACTTGGCATTGCATCGTTGGTCGTAATTTTGgtaactccctttttgttttttttccttgcatttgtcaatgattttggtatttgggtatacttggatttgtggtttgtgtgcttcttttatagtagaaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG