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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTTCTAATGTTTCTGTGGAGCTGCCCCCTGAACCTGCAGCTGATTTGGCTCATAATTTGCTCAAAAGGGTTTTACAATTCAACATGCATTCAACAGAGgtaatcattacatgcctacatggtattattgatcgaattcaacatgcattcaacagaggtaatcattacatgcctacatgtattattcttcaatgtctat...

Basic information

species Glycine max
transcript GLYMA15G15920.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G15920.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv05s0020g01160.t01 (Vitis vinifera), 5'ss of exon 2
AATTTCTAATGTTTCTGTGGAGCTGCCCCCTGAACCTGCAGCTGATTTGGCTCATAATTTGCTCAAAAGGGTTTTACAATTCAACATGCATTCAACAGAGgtaatcattacatgcctaca-tggtattattg-atcgaattcaacatgcattcaacagaggtaatcattacatgcctacatgtattattcttcaatgtctat
|||||| |||||||||||||| ||||||||||||||||| |||| ||| | ||| || ||||| | | || ||    | ||||||||||||||||| |||||| | || |  || |  || |  |||  |   || | || ||  | |  | |           || ||| || |  |  |   || ||   || ||     
AATTTCCAATGTTTCTGTGGAACTGCCCCCTGAACCTGCTGCTGCTTTAGGTCACAACTTGCTTACACGGATTGAGGAGTTCAACATGCATTCAACTGAGgtatttatcatttggcatcactaatatagtgatatggtatacagaaaggctgctttgttttctctccttatattctcatttcctttgttgcacactgatc--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193660812|gb|FK602140.1|FK602140
EST:     CTCATAATTTGCTCAAAAGGGTTTTACAATTCAACATGCATTCAACAGAG                         GTTGATGCTCATTTAAAAGCACT-AAAACATTATGCAGACGGAAAGCTTCA
genomic: CTCATAATTTGCTCAAAAGGGTTTTACAATTCAACATGCATTCAACAGAGgtaatcatta ... tgcttgatagGTTGATGCTCATTTAAAAGCACTAAAAACATTATGCAAACGGAAAGCTTCA