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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTTGCATGACTATTGTAGAGGCTGCAGCCTGGATGATTGGTGGACTTTAAGCTTGTGAAAGAATAATTGCCGAATGGAACTTGCAAGACCTGCCTCAAgtaatcttatgatatttcatgtgataatatatattaatgaggtgtttacaactgagaatattattgatgactcatacaaagtagtgacattctattgacc...

Basic information

species Glycine max
transcript GLYMA15G13700.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208312439|gb|GE110347.1|GE110347
EST:     AAGCTTGTGAAAGAATAATTGCCGAATGGAACTTGCAAGACCTGCCTCAA                         GTAGTAGAAAATTGAAAGATTTATTGCTTCAGAGTGTATTAATCGTCTTTG
genomic: AAGCTTGTGAAAGAATAATTGCCGAATGGAACTTGCAAGACCTGCCTCAAgtaatcttat ... tcttttacagGTAGAAGAAAATTGAAAGATTTATTGCTTCAGAGTG-A-TAATCGTCTTTG
EST: gi|7684977|gb|AW755625.1|AW755625
EST:     AAGCTTGTGAAAGAATAATTGCCGAATGGAACTTGCAAGACCTGCCTCAA                         GTAGAAGAAAATTGAAAGATTTATTGCTTCAGAGTGATAATCGTCTTTGTG
genomic: AAGCTTGTGAAAGAATAATTGCCGAATGGAACTTGCAAGACCTGCCTCAAgtaatcttat ... tcttttacagGTAGAAGAAAATTGAAAGATTTATTGCTTCAGAGTGATAATCGTCTTTGTG
EST: gi|11687353|gb|BF594993.1|BF594993
EST:     AAGCTTGTGAAAGAATAATTGCCGAATGGAACTTGCAAGACCTGCCTCAA                         GTAGAAGAAAATTGAAAGATTTATTGCTTCAGAGTGATAATCGTCTTTGTG
genomic: AAGCTTGTGAAAGAATAATTGCCGAATGGAACTTGCAAGACCTGCCTCAAgtaatcttat ... tcttttacagGTAGAAGAAAATTGAAAGATTTATTGCTTCAGAGTGATAATCGTCTTTGTG
EST: gi|298168064|gb|HO013327.1|HO013327
EST:     AAGCTTGTGAAAGAATAATTGCCGAATGGAACTTGCAAGACCTGCCTCAA                         GTAGAAGAAAATTGAAAGATTTATTGCTTCAGAGTGATAATCGTCTTTGTG
genomic: AAGCTTGTGAAAGAATAATTGCCGAATGGAACTTGCAAGACCTGCCTCAAgtaatcttat ... tcttttacagGTAGAAGAAAATTGAAAGATTTATTGCTTCAGAGTGATAATCGTCTTTGTG
EST: gi|208205827|gb|GE007078.1|GE007078
EST:     AAGCTTGTGAAAGAATAATTGCCGAATGGAACTTGCAAGACCTGCCTCAA                         GTAGAAGAAAATTGAAAGATTTATTGCTTCAGAGTGATAATCGTCTTTGTG
genomic: AAGCTTGTGAAAGAATAATTGCCGAATGGAACTTGCAAGACCTGCCTCAAgtaatcttat ... tcttttacagGTAGAAGAAAATTGAAAGATTTATTGCTTCAGAGTGATAATCGTCTTTGTG
EST: gi|213596786|gb|DB964077.1|DB964077
EST:     AAGCTTGTGAAAGAATAATTGCCGAATGGAACTTGCAAGACCTGCCTCAA                         GTAGAA-AAA-TTGAAAGATTTATTGCTTCAGAGTGATAATCGTCTTTGTG
genomic: AAGCTTGTGAAAGAATAATTGCCGAATGGAACTTGCAAGACCTGCCTCAAgtaatcttat ... tcttttacagGTAGAAGAAAATTGAAAGATTTATTGCTTCAGAGTGATAATCGTCTTTGTG
EST: gi|213587902|gb|DB971391.1|DB971391
EST:     AAGCTTGTGAAAGAATAATTGCCAAATGGAACTTGCAAGACCTGCCTCAA                         GTAGAAGAAAATTGAAAGATTTATTGCTTCAGAGTGATAATCGTCTTTGTG
genomic: AAGCTTGTGAAAGAATAATTGCCGAATGGAACTTGCAAGACCTGCCTCAAgtaatcttat ... tcttttacagGTAGAAGAAAATTGAAAGATTTATTGCTTCAGAGTGATAATCGTCTTTGTG
EST: gi|298187274|gb|HO034423.1|HO034423
EST:     AAGCTTGTGAAAGAATAATTGCCGAATGGAACTTGCAAGACCTGCCTCAA                         GTAGAAGAAAATTGAAAGATTTATTGCTTCAGAGTGATAATCGTCTTTGTG
genomic: AAGCTTGTGAAAGAATAATTGCCGAATGGAACTTGCAAGACCTGCCTCAAgtaatcttat ... tcttttacagGTAGAAGAAAATTGAAAGATTTATTGCTTCAGAGTGATAATCGTCTTTGTG
EST: gi|192331297|gb|FK021008.1|FK021008
EST:     GCCGAATGGAACTTGCAAGACCTGCCTCAA                         GTAGAAGAAAATTGAAAGATTTATTGCTTCAGAGTGATAATCGTCTTTGTG
genomic: GCCGAATGGAACTTGCAAGACCTGCCTCAAgtaatcttat ... tcttttacagGTAGAAGAAAATTGAAAGATTTATTGCTTCAGAGTGATAATCGTCTTTGTG
EST: gi|192319051|gb|FK010615.1|FK010615
EST:     AAGCTTGTGAAAGAATAATTGCCGAATGGAACTTGCAAGACCTGCCTCAA                         GTAGAAGAAAATTGAAAGATTTATTGCTTCAGAGTGATAATCGTCTTTGTG
genomic: AAGCTTGTGAAAGAATAATTGCCGAATGGAACTTGCAAGACCTGCCTCAAgtaatcttat ... tcttttacagGTAGAAGAAAATTGAAAGATTTATTGCTTCAGAGTGATAATCGTCTTTGTG
EST: gi|9203416|gb|BE329569.1|BE329569
EST:     AAGCTTGTGAAAGAATAATTGCCGAATGGAACTTGCAAGACCTGCCTCAA                         GTAGAAGAAAATTGAAAGATTTATTGCTTCAGAGTGATAATCGTCTTTGTG
genomic: AAGCTTGTGAAAGAATAATTGCCGAATGGAACTTGCAAGACCTGCCTCAAgtaatcttat ... tcttttacagGTAGAAGAAAATTGAAAGATTTATTGCTTCAGAGTGATAATCGTCTTTGTG
EST: gi|151400283|gb|EV270097.1|EV270097
EST:     AAGCTTGTGAAAGAATAATTGCCGAATGGAACTTGCAAGACCTGCCTCAA                         GTAGAAGAAAATTGAAAGATTTATTGCTTCAGAGTGATAATCGTCTTTGTG
genomic: AAGCTTGTGAAAGAATAATTGCCGAATGGAACTTGCAAGACCTGCCTCAAgtaatcttat ... tcttttacagGTAGAAGAAAATTGAAAGATTTATTGCTTCAGAGTGATAATCGTCTTTGTG
EST: gi|15815541|gb|BI787816.1|BI787816
EST:     AAGCTTGTGAAAGAATAATTGCCGAATGGAACTTGCAAGACCTGCCTCAA                         GTAGAAGAAAATTGAAAGATTTATTGCTTCAGAGTGATAATCGTCTTTGTG
genomic: AAGCTTGTGAAAGAATAATTGCCGAATGGAACTTGCAAGACCTGCCTCAAgtaatcttat ... tcttttacagGTAGAAGAAAATTGAAAGATTTATTGCTTCAGAGTGATAATCGTCTTTGTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTTTGCATGACTATTGTAGAGGCTGCAGCCTGGATGATTGGTGGACTTTAAGCTTGTGAAAGAATAATTGCCGAATGGAACTTGCAAGACCTGCCTCAAgtaatcttatgatatttcatgtgataatatatattaatgaggtgtttacaactgagaatattattgatgactcatacaaagtagtgacattctattgacc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA