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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAATTTCTCCGTATCATTTGTACTTGAACCCTAGATTGGTGGTGAAGCAATATCAGTTTTGGCGTCTGGTTACTAATTTCTTGTACTTTCGTAAAATGGgtaaaatttctgccgttcaccatttagtgaattgttattcatcagatacgggtatttcaatttcagttttaatgtagaaaaagtctcgatttttttttat...

Basic information

species Glycine max
transcript GLYMA15G11350.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G11350.2 (Glycine max), 5'ss of exon 2
lower sequence: AT4G21810.1 (Arabidopsis thaliana), 5'ss of exon 2
ATAATTTCTCCGTATCATTTGTACTTGAACCCTAGATTGGTGGTGAAGCAATATCAGTTTTGGCGTCTGGTTACTAATTTCTTGTACTTTCGTAAAATGGgtaaaatt-tctgccgttcaccat-ttagtgaattgttattcatcagatacgggtatttcaatttcagttttaatgtagaaaaagtctcgatttttttttat
|| || ||||| ||| || | ||| | || ||||   | |||||||||||||| ||||| |||||||| || || |||||| | || || || || |||||||||||| ||| | | ||    | || || |  | ||||| |  |      |  || |  || ||  | | |   | ||  |    |    | ||||| | 
ATTATATCTCCTTATAATCTCTACCTAAATCCTACCCTTGTGGTGAAGCAATACCAGTTCTGGCGTCTTGTCACAAATTTCCTTTATTTCCGAAAGATGGgtaaaattatcttcagctctttgtgttggttatatattatt-agtattctgagaaatgttcatatctttctcatcttggactattgttgtgctgtttttca-

upper sequence: GLYMA15G11350.2 (Glycine max), 5'ss of exon 2
lower sequence: AT4G04860.1 (Arabidopsis thaliana), 5'ss of exon 2
ATAATTTCTCCGTATCATTTGTACTTGAACCCTAGATTGGTGGTGAAGCAATATCAGTTTTGGCGTCTGGTTACTAATTTCTTGTACTTTCGTAAAATGGgtaaaatttctgccgttcaccatttagtgaattgttattcatcagatacgggtatttcaatttcag-------ttttaatgtagaaaaagtctcgatttttttttat------------------------------------------------------------------
|| || ||||| ||| |  | || ||||| || | | | |||||||||||||| || | ||||||||| ||||||||||||||||| || || || ||||||||  |||   |    ||| | |   ||||     || || ||  |  | |  | | | |||||        | ||    | |  | | | |    | |    |                                                                    
ATCATATCTCCATATAACCTTTATTTGAATCCGACACTTGTGGTGAAGCAATACCAATATTGGCGTCTCGTTACTAATTTCTTGTATTTCCGGAAGATGGgtaa--ttttcccttaacactactctatgaaactggatacaacatttgtgtgcttattactttcatatgaagctcttgtctttgtcacattattagctctaggctgctacttgttaatagcgttgtgactgattgattgcttataaacaaatatgtgtttggggttgttgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9259041|gb|BE347188.1|BE347188
EST:     ATATCAGTTTTGGCGTCTGGTTACTAATTTCTTGTACTTTCGTAAAATGG                         ACTTGGATTTCCTGTTTCATATGTTTTTTCTTGCCCGTTACTGCAAGCTTC
genomic: ATATCAGTTTTGGCGTCTGGTTACTAATTTCTTGTACTTTCGTAAAATGGgtaaaatttc ... gaatgggcagACTTGGATTTCCTGTTTCATATGTTTTTTCTTGCCCGTTACTGCAAGCTTC
EST: gi|151394524|gb|EV264395.1|EV264395
EST:     ATATCAGTTTTGGCGTCTGGTTACTAATTTCTTGTACTTTCGTAAAATGG                         ACTTGGATTTCCTGTTTCATATGTTTTTTCTTGCCCGTTACTGCAAGCTTC
genomic: ATATCAGTTTTGGCGTCTGGTTACTAATTTCTTGTACTTTCGTAAAATGGgtaaaatttc ... gaatgggcagACTTGGATTTCCTGTTTCATATGTTTTTTCTTGCCCGTTACTGCAAGCTTC
EST: gi|58023286|gb|CX710027.1|CX710027
EST:     ATATCAGTTTTGGCGTCTGGTTACTAATTTCTTGTACTTTCGTAAAATGG                         ACTTGGATTTCCTGTTTCATATGTTTTTTCTTGCCCGTTACTGCAAGCTTC
genomic: ATATCAGTTTTGGCGTCTGGTTACTAATTTCTTGTACTTTCGTAAAATGGgtaaaatttc ... gaatgggcagACTTGGATTTCCTGTTTCATATGTTTTTTCTTGCCCGTTACTGCAAGCTTC
EST: gi|58016888|gb|CX703630.1|CX703630
EST:     ATATCAGTTTTGGCGTCTGGTTACTAATTTCTTGTACTTTCGTAAAATGG                         ACTTGGATTTCCTGTTTCATATGTTTTTTCTTGCCCGTTACTGCAAGCTTC
genomic: ATATCAGTTTTGGCGTCTGGTTACTAATTTCTTGTACTTTCGTAAAATGGgtaaaatttc ... gaatgggcagACTTGGATTTCCTGTTTCATATGTTTTTTCTTGCCCGTTACTGCAAGCTTC
EST: gi|151397563|gb|EV267436.1|EV267436
EST:     ATATCAGTTTTGGCGTCTGGTTACTAATTTCTTGTACTTTCGTAAAATGG                         ACTTGGA-TTCCTGTTTCATATGTTTTTTCTTGCCCGTTACTGCAAGCTTC
genomic: ATATCAGTTTTGGCGTCTGGTTACTAATTTCTTGTACTTTCGTAAAATGGgtaaaatttc ... gaatgggcagACTTGGATTTCCTGTTTCATATGTTTTTTCTTGCCCGTTACTGCAAGCTTC
EST: gi|254322572|gb|GR837986.1|GR837986
EST:     ATATCAGTTTTGGCGTCTGGTTACTAATTTCTTGTACTTTCGTAAAATGG                         ACTTGGATTTCCTGTTTCATATGTTTTTTCTTGCCCGTTACTGCAAGCTTC
genomic: ATATCAGTTTTGGCGTCTGGTTACTAATTTCTTGTACTTTCGTAAAATGGgtaaaatttc ... gaatgggcagACTTGGATTTCCTGTTTCATATGTTTTTTCTTGCCCGTTACTGCAAGCTTC
EST: gi|9203644|gb|BE329868.1|BE329868
EST:     ATATCAGTTTTGGCGTCTGGTTACTAATTTCTTGTACTTTCGTAAAATGG                         ACTTGGATTTCCTGTTTCATATGTTTTTTCTTGCCCGTTACTGCAAGCTTC
genomic: ATATCAGTTTTGGCGTCTGGTTACTAATTTCTTGTACTTTCGTAAAATGGgtaaaatttc ... gaatgggcagACTTGGATTTCCTGTTTCATATGTTTTTTCTTGCCCGTTACTGCAAGCTTC
EST: gi|213590246|gb|DB970086.1|DB970086
EST:     ATATCAGTTTTGGCGTCTGGTTACTAATTTCTTGTACTTTCGTAAAATGG                         ACTTGGATTTCCTGTTTCATATGTTTTTTCTTGCCCGTTACTGCAAGCTTC
genomic: ATATCAGTTTTGGCGTCTGGTTACTAATTTCTTGTACTTTCGTAAAATGGgtaaaatttc ... gaatgggcagACTTGGATTTCCTGTTTCATATGTTTTTTCTTGCCCGTTACTGCAAGCTTC
EST: gi|19453304|gb|BM954714.1|BM954714
EST:     ATATCAGTTTTGGCGTCTGGTTACTAATTTCTTGTACTTTCGTAAAATGG                         ACTTGGATTTCCTGTTTCATATGTTTTTTCTTGCCCGTTACTGCAAGCTTC
genomic: ATATCAGTTTTGGCGTCTGGTTACTAATTTCTTGTACTTTCGTAAAATGGgtaaaatttc ... gaatgggcagACTTGGATTTCCTGTTTCATATGTTTTTTCTTGCCCGTTACTGCAAGCTTC
EST: gi|120532687|gb|EH260820.1|EH260820
EST:     ATATCAGTTTTGGCGTCTGGTTACTAATTTCTTGTACTTTCGTAAAATGG                         ACTTGGATTTCCTGTTTCATATGTTTTTTCTTGCCCGTTACTGCAAGCTTC
genomic: ATATCAGTTTTGGCGTCTGGTTACTAATTTCTTGTACTTTCGTAAAATGGgtaaaatttc ... gaatgggcagACTTGGATTTCCTGTTTCATATGTTTTTTCTTGCCCGTTACTGCAAGCTTC
EST: gi|213598283|gb|DB970167.1|DB970167
EST:     ATATCAGTTTTGGCGTCTGGTTACTAATTTCTTGTACTTTCGTAAAATGG                         ACTTGGATTTCCTGTTTCATATGTTTTTTCTTGCCCGTTACTGCAAGCTTC
genomic: ATATCAGTTTTGGCGTCTGGTTACTAATTTCTTGTACTTTCGTAAAATGGgtaaaatttc ... gaatgggcagACTTGGATTTCCTGTTTCATATGTTTTTTCTTGCCCGTTACTGCAAGCTTC
EST: gi|16348305|gb|BI973900.1|BI973900
EST:     ATATCAGTTTTGGCGTCTGGTTACTAATTTCTTGTACTTTCGTAAAATGG                         ACTTGGATTTCCTGTTTCATATGTTTTTTCTTGCCCGTTACTGCAAGCTTC
genomic: ATATCAGTTTTGGCGTCTGGTTACTAATTTCTTGTACTTTCGTAAAATGGgtaaaatttc ... gaatgggcagACTTGGATTTCCTGTTTCATATGTTTTTTCTTGCCCGTTACTGCAAGCTTC
EST: gi|18733025|gb|BM527383.1|BM527383
EST:     ATATCAGTTTTGGCGTCTGGTTACTAATTTCTTGTACTTTCGTAAAATGG                         ACTTGGATTTCCTGTTTCATATGTTTTTTCTTGCCCGTTACTGCAAGCTTC
genomic: ATATCAGTTTTGGCGTCTGGTTACTAATTTCTTGTACTTTCGTAAAATGGgtaaaatttc ... gaatgggcagACTTGGATTTCCTGTTTCATATGTTTTTTCTTGCCCGTTACTGCAAGCTTC