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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATATGCTGGAGAAAACTGCTACTCTCTTTCGACCAAAACTCATTATTGCTGGTGCTAGTGCTTATCCTTGAGACATTGACTACCCTCGCATGAGAAAAgtatgttttgtacttatgcattttctggaattataaattgctcttgatctaatatgtctctgcattatatggttttattcttggcaaaaagttaattacatcttatacgcatggaaag

Basic information

species Glycine max
transcript GLYMA15G09640.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G09640.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv04s0008g00770.t01 (Vitis vinifera), 5'ss of exon 5
TGATATGCTGGAGAAAACTGCTACTCTCTTTCGACCAAAACTCATTATTGCTGGTGCTAGTGCTTATCCTTGAGACATTGACTACCCTCGCATGAGAAAAgtatgttt---tgtacttatgcattttctggaattataaattgctcttg---------atctaa---tatgtctctgcattat----------------------atggttttattcttggcaaaaagttaattacatcttatacgcatggaaag
||| ||||| |||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||  |||| || ||||| ||||| || |||||  |   |||| |||||| |  |||  ||| |||   | |||||          ||  ||   ||| | ||| |||| |                      ||  |||| || ||     ||  ||| || ||  | ||| ||   |||||
TGACATGCTTGAGAAAACAGCTAATCTTTTTCGACCAAAACTCATTATTGCTGGTGCTAGTGCTTATCCTCGAGATTTTGATTATCCTCGTATGAGGAAGgtatgggtatatgtagttatgcttgctcttcaatgatag--tactcttagtaataagtattcaaatgtatttttctacattttctttaaattcgtttttttccctatttttttttttttaatctaatattagttgcacttgatatgctctgaaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24135899|gb|BU926409.1|BU926409
EST:     CTGGTGCTAGTGCTTATCCTCGAGACATTGACTACCCTCGCATGAGAAAA                         ATTGCAGATGAAGTAGGTGCTTTTCTTATGATGGATATGGCTCATATAAGT
genomic: CTGGTGCTAGTGCTTATCCTTGAGACATTGACTACCCTCGCATGAGAAAAgtatgttttg ... gcatggaaagATTGCAGATGAAGTAGGTGCTTTTCTTATGATGGATATGGCTCATATAAGT