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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTCCATGTCCATGTCATGGATGGTTGGGATATTAATTCGGTTGACCCTTGTACTTGGGACATGGTCGGTTGCTCTGCCGAAGGTTATGTCATGTCCCTgtaagtctttttgttgctaatttctatcacttaagcttgcttccttctttttttggctatgaataatgtaacatgtttttacattttagcatttttgtgt...

Basic information

species Glycine max
transcript GLYMA15G09100.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G09100.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G45780.1 (Arabidopsis thaliana), 5'ss of exon 2
AGTTCCATGTCCATGTCATGGATGGTTGGGATATTAATTCGGTTGACCCTTGTACTTGGGACATGGTCGGTTGCTCTGCCGAAGGTTATGTCATGTCCCTgtaagtctttttgttgc-taatttctatcacttaagcttgcttcctt-ctttttttggctatgaataatgtaacatgtttttacattttagcatttttgtgt
|     |     | ||  ||  ||||||||||||||| || ||||| |||||||||||| ||||||| ||||| ||| | ||||||| |||  | || |||| ||| | |||    |   | || |   ||| ||  |  ||      | ||| || |||  |  || || ||  | ||  | ||                 
AAGATGAGAAAGAGGTTTTGTCTGGTTGGGATATTAACTCTGTTGATCCTTGTACTTGGAACATGGTTGGTTGTTCTTCTGAAGGTTTTGTGGTTTCTCTgtgagtatcttttgcacaccacttgttcgactaaatgtctctgagaaacgtttctttgctgagtttattgaaatct-ttaatgcag----------------

upper sequence: GLYMA15G09100.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv10s0003g01490.t01 (Vitis vinifera), 5'ss of exon 2
AGTTCCATGTCCA-TGTCATGGATGGTTGGGATATTAATTCGGTTGACCCTTGTACTTGGGACATGGTCGGTTGCTCTGCCGAAGGTTATGTCATGTCCCTgtaagtctttt--tgttgctaatttctat---------cacttaagcttgcttccttcttttt--ttggctatgaataatgtaacatgtttttacattttagcattt-ttgtgt---------------------------------------------
  |     ||| | |||  | ||||| ||||||||||| || ||||| || ||||||||| ||||||| |||||| || | || ||||  ||||| || ||||||||||     ||   |   || || |         |  | ||  | |    || |||||   |  | |  |  ||   | | |  || ||  ||      || |  || ||                                             
-ATGATGAGTCGAATGTGCTTGATGGGTGGGATATTAACTCTGTTGATCCCTGTACTTGGAACATGGTGGGTTGCACTCCTGAGGGTTTCGTCATTTCTCTgtaagtctaccactgcccccgtttcctctgtttggttgccgtgaaaatggaactctgcttttcagtcagttgggtgtaggtttatagtttattcaatgcccaaatctgctgagttttactatatctttgcacttaataaaagttctcgactcttgacag