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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGCCGAAAGGTCTTGAACATGAGGCTGTTCCCAAATGAAAATACGGGCAAAGCGTGGGACCACAGTGTGATGCAGAAAAATTATCAAGTCTTATTGGgtgagtaagtgagtattcgcatttttcagtcttaattatatataggatgcaaaaattataatttatttttattattgtgtgtttttaacag

Basic information

species Glycine max
transcript GLYMA15G08610.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G08610.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv10s0003g00640.t01 (Vitis vinifera), 5'ss of exon 4
ATGCCGAAAGGTCTTGAACATGAGGCTGTTCCCAAATGAAAATACGGGCAAAGCGTGGGACCACAGTGTGATGCAGAAAAATTATCAAGTCTTATTGGgtgagtaagtgagtattcgcatttttcagtcttaattatatataggatgcaaaaattataatttatttttattattgtgtgtttttaacag
||| || ||||| |||||||||||| ||||||||||||| | ||| |||| ||| |||||||| || ||          |||| ||   |  | |    | |     ||| |       ||||  |      ||| |   |    |  | ||||||| | ||  ||  ||| | |||  | | |  |||
ATGTCGGAAGGTGTTGAACATGAGGTTGTTCCCAAATGAGACTACTGGCAGAGCATGGGACCAAAGCgt----------aattttccctttctttatattcatcttctgaat-----tgttttctaccacctattgttattgttgtcgagaaattatgaattcgttgaattttggtggatatgtg-cag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31458281|gb|CD400309.1|CD400309
EST:     GAAAAATTATCAAGTCTTATTGG                         TGAGTCAGTTTACGTTGTATGGATTCCTGAAGGGTAACAAACCGGATTTTC
genomic: GAAAAATTATCAAGTCTTATTGGgtgagtaagt ... tttttaacagTGAGTCAGTTTACGTTGTATGGATTCCTGAAGGGTAACAAACCGGATTTTC
EST: gi|4292154|gb|AI441864.1|AI441864
EST:     CAAAGCGTGGGACCACAGTGTGATGCAGAAAAATTATCAAGTCTTATTGG                         TGAGTCAGTTTACGTTGTATGGATTCCTNGA-GGGTAACAAACCGGATTNT
genomic: CAAAGCGTGGGACCACAGTGTGATGCAGAAAAATTATCAAGTCTTATTGGgtgagtaagt ... tttttaacagTGAGTCAGTTTACGTTGTATGGATTCCT-GAAGGGTAACAAACCGGATT-T
EST: gi|7326886|gb|AW620684.1|AW620684
EST:     CAAAGCGTGGGACCACAGTGTGATGCAGAAAAATTATCAAGTCTTATTGG                         TGAGTCAGTTTACGTTGTATGGATTCCTGAAGGGTAACAAACCGGATTTTC
genomic: CAAAGCGTGGGACCACAGTGTGATGCAGAAAAATTATCAAGTCTTATTGGgtgagtaagt ... tttttaacagTGAGTCAGTTTACGTTGTATGGATTCCTGAAGGGTAACAAACCGGATTTTC
EST: gi|7326731|gb|AW620529.1|AW620529
EST:     CAAAGCGTGGGACCACAGTGTGATGCAGAAAAATTATCAAGTCTTATTGG                         TGAGTCAGTTTACGTTGTATGGATTCCTGAAGGGTAACAAACCGGATTTTC
genomic: CAAAGCGTGGGACCACAGTGTGATGCAGAAAAATTATCAAGTCTTATTGGgtgagtaagt ... tttttaacagTGAGTCAGTTTACGTTGTATGGATTCCTGAAGGGTAACAAACCGGATTTTC
EST: gi|58020386|gb|CX707128.1|CX707128
EST:     CAAAGCGTGGGACCACAGTGTGATGCAGAAAAATTATCAAGTCTTATTGG                         TGAGTCAGTTTACGTTGTATGGATTCCTGAAGGGTAACAAACCGGATTTTC
genomic: CAAAGCGTGGGACCACAGTGTGATGCAGAAAAATTATCAAGTCTTATTGGgtgagtaagt ... tttttaacagTGAGTCAGTTTACGTTGTATGGATTCCTGAAGGGTAACAAACCGGATTTTC
EST: gi|7326594|gb|AW620392.1|AW620392
EST:     CAAAGCGTGGGACCACAGTGTGATGCAGAAAAATTATCAAGTCTTATTGG                         TGAGTCAGTTTACGTTGTATGGATTCCTGAAGGGTAACAAACCGGATTTTC
genomic: CAAAGCGTGGGACCACAGTGTGATGCAGAAAAATTATCAAGTCTTATTGGgtgagtaagt ... tttttaacagTGAGTCAGTTTACGTTGTATGGATTCCTGAAGGGTAACAAACCGGATTTTC
EST: gi|298180580|gb|HO025667.1|HO025667
EST:     CAAAGCGTGGGACCACAGTGTGATGCAGAAAAATTATCAAGTCTTATTGG                         TGAGTCAGTTTACGTTGTATGGATTCCTGAAGGGTAACAAACCGGATTTTC
genomic: CAAAGCGTGGGACCACAGTGTGATGCAGAAAAATTATCAAGTCTTATTGGgtgagtaagt ... tttttaacagTGAGTCAGTTTACGTTGTATGGATTCCTGAAGGGTAACAAACCGGATTTTC