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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGTATAGTTACCTGAACATATCCATTAGTAGAAACATTGTGCCCGATGAAATTAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTCTTTCAGgtatggcctgcttctgcagtctgcacacttagaattgtactaaaattttggggagaatgaatttgatctactaacaagaaatttgcatatgtatatgatgtttgtgatgtcatggtattcacaattttgtaaatcgatcttctgcag

Basic information

species Glycine max
transcript GLYMA15G07390.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G07390.1 (Glycine max), 5'ss of exon 2
lower sequence: AT4G21570.1 (Arabidopsis thaliana), 5'ss of exon 3
GATGTATAGTTACCTGAACATATCCATTAGTAGAAACATTGTGCCCGATGAAATTAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTCTTTCAGgtatggcctgcttctgcagtctgcacacttagaattgtactaaaattttggggagaatgaatttgatctactaacaagaaatttgcatatgtatatgatgtttgtgatgtcatggtattcacaattttgtaaatcgatcttctgcag
|||||||||||| || |||||||| || || | ||||||| |||| |||| ||| ||||| || || |||||||| ||||| |||||||| || |||||||| | | ||   ||| ||   ||||      || ||   |||| || |        ||    ||  | |||    || |  ||||  | | | | |  ||   |                                           
GATGTATAGTTATCTAAACATATCTATGAGCAAAAACATTTTGCCTGATGGAATCAAAGGAAGAGAGATTCACCATTCTTTCCCAATGACTCTTTTTCAGgt-tcgtctctatcttca--ttgcat-----gatttcatctaatatct--------atttgcttc-tttacccttaaaagctttgtgtctat-tgttttgacag-------------------------------------------

upper sequence: GLYMA15G07390.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv00s0404g00020.t01 (Vitis vinifera), 5'ss of exon 3
GATGTATAGTTACCTGAACATATCCATTAGTAGAAACATTGTGCCCGATGAAATTAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTCTTTCAGgtatggcctg---cttctgcagtctgcacacttagaattgtactaaaattttggggagaatgaatttgatctactaacaagaaatttgcatatgtatatgatgtttgtgatgtcatggtattcacaattttgtaaatcgatcttctgcag
  ||||||| ||| ||||||||||||| || | |||||| ||||| |||| ||||||||| || |||||||||||||| || ||||||||||| || |||||  |          ||  |  | |     |  ||  |    || | |   |       |  ||| || | |  |||  ||  ||||  || |  ||| |                                                  
ATTGTATAGCTACTTGAACATATCCATCAGCAAAAACATAGTGCCAGATGGAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAGgtgagaaagaagttatcctctctttatttccccagggtcaatctgagaagattatcttcaataatgtgttatggtaa-gagctatttcaatttcaataggg-------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208259224|gb|GE055474.1|GE055474
EST:     AAATTAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTCTTTCAG                         CCTTGTACTGTTCGCCTGAACCACCATAATTTGAAGCTTCTAAAATATTGG
genomic: AAATTAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTCTTTCAGgtatggcctg ... tcttctgcagCCTTGTACTGTTCGCCTGAACCACCATAATTTGAAGCTTCTAAAATATTGG
EST: gi|208248101|gb|GE044411.1|GE044411
EST:     AAATTAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTCTTTCAG                         CCTTGTACTGTTCGCCTGAACCACCATAATTTGAAGCTTCTAAAATATTGG
genomic: AAATTAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTCTTTCAGgtatggcctg ... tcttctgcagCCTTGTACTGTTCGCCTGAACCACCATAATTTGAAGCTTCTAAAATATTGG
EST: gi|298164950|gb|HO010947.1|HO010947
EST:     AAATTAAAGGCAGGGAAATTCACCACCCTTTTCCAATGACACTCTTTCAG                         CCTTGTACTGTTCGCCTGAACCACCATAGTTTGAAGCTTCTAAAATATTGG
genomic: AAATTAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTCTTTCAGgtatggcctg ... tcttctgcagCCTTGTACTGTTCGCCTGAACCACCATAATTTGAAGCTTCTAAAATATTGG
EST: gi|192298462|gb|FG989183.1|FG989183
EST:     AAATTAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTCTTTCAG                         CCTTGTACTGTTCGCCTGAACCACCATAATTTGAAGCTTCTAAAATATTGG
genomic: AAATTAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTCTTTCAGgtatggcctg ... tcttctgcagCCTTGTACTGTTCGCCTGAACCACCATAATTTGAAGCTTCTAAAATATTGG