1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
CTCTGCTTTTGAAGAAGGGAGGTTCTGTGAAATTTTTCACTCAAATGCTTCTGGTTGGAGGAGTTGTGAGACTTGTCGAAAGgtgagccaaatcttttttatggttgtttgaaatgctttattaatgttactgttactgtgtttgctgcaaaaaaatttacatagtttccaaagctgagtttgaattatgtagttttaactgatgattaatcattctttgcag
species | Glycine max |
transcript | GLYMA15G07350.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTTTTCACTCAAATGCTTCTGGTTGGAGGAGTTGTGAGACTTGTCGAAAG CGGATTCATTGTGGGTGTATTGTTTCAAEST: gi|193702724|gb|FK637840.1|FK637840
genomic: TTTTTCACTCAAATGCTTCTGGTTGGAGGAGTTGTGAGACTTGTCGAAAGgtgagccaaa ... ttctttgcagCGGATTCATTGTGGGTGTATTGTTTCAA
EST: TTTTTCACTCAAATGCTTCTGGTTGGAGGAGTTGTGAGACTTGTCGAAAG CGGATTCATTGTGGGTGTATTGTTTCAAGTCATGCTTTTATGTTGTTGGATEST: gi|193453949|gb|FK419564.1|FK419564
genomic: TTTTTCACTCAAATGCTTCTGGTTGGAGGAGTTGTGAGACTTGTCGAAAGgtgagccaaa ... ttctttgcagCGGATTCATTGTGGGTGTATTGTTTCAAGTCATGCTTTTATGTTGTTGGAT
EST: TTTTTCACTCAAATGCTTCTGGTTGGAGGAGTTGTGAGACTTGTCGAAAG CGGATTCATTGTGGGTGTATTGTTTCAAGTCATGCTTTTATGTTGTTGGAT
genomic: TTTTTCACTCAAATGCTTCTGGTTGGAGGAGTTGTGAGACTTGTCGAAAGgtgagccaaa ... ttctttgcagCGGATTCATTGTGGGTGTATTGTTTCAAGTCATGCTTTTATGTTGTTGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCTGCTTTTGAAGAAGGGAGGTTCTGTGAAATTTTTCACTCAAATGCTTCTGGTTGGAGGAGTTGTGAGACTTGTCGAAAGgtgagccaaatcttttttatggttgtttgaaatgctttattaatgttactgttactgtgtttgctgcaaaaaaatttacatagtttccaaagctgagtttgaattatgtagttttaactgatgattaatcattctttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG