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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCTGGCTGCCAAGAAACTGGAAAGTATGGGCCCTGTCACTAAAAATGAATGGATTATGGTTGGCACAATGCTTCTTGCAGTGTCTTTGTGGATCTTTGGgtatgtcttctgcagtctattatatctacacctatgtatgtctatgcatgactttttttttttttttttactgatttctaagtttgttgattttttgggt...

Basic information

species Glycine max
transcript GLYMA15G06110.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G06110.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G040933_T02 (Zea mays), 5'ss of exon 3
CCCTGGCTGCCAAGAAACTGGAAAGTATGGGCCCTGTCACTAAAAATGAATGGATTATGGTTGGCACAATGCTTCTTGCAGTGTCTTTGTGGATCTTTGGgtatg-tcttctgcagtctattatatctacacctatgtatgtctatgcatgactttttttttttttttttactgatttctaagtttgttgattttttgggt-
| |||||||  ||||||||| |    ||||||||||| |||||||| |||| | ||||| ||||||||||| |||||||||| || || ||| | |||||||| | | | |   |    |  | |  ||  |  ||   |    || || || |||  |    |||      ||    |||  ||  |  ||  ||    | 
CACTGGCTGAAAAGAAACTGAAGCTCATGGGCCCTGTGACTAAAAACGAATCGGTTATGATTGGCACAATGATTCTTGCAGTCTCCTTATGGGTTTTTGGgtaaggtttcccataactgaagaaaattat-ctcatcc-tactgattcacgattttaatacaatttgcagcttgtgagctattttgctctatgattctactt

upper sequence: GLYMA15G06110.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G64290.1 (Arabidopsis thaliana), 5'ss of exon 2
CCCTGGCTGCCAAGAAACTGGAAAGTATGGGCCCTGTCACTAAAAATGAATGGATTATGGTTGGCACAATGCTTCTTGCAGTGTCTTTGTGGATCTTTGGgtatgtcttctgcagtctattatatctacacctatgtatgtctatgcatgactttttttttttttttttactgatttctaagtttgttgattttttgggt
   | ||||| | ||||||  |    |||||||||||||||||||| |||||||| ||||| || |||||||||||||| ||  || | |||||||  ||||| |||||        | | || | |      ||    ||  ||  |  |  | |   | ||   |    | | |  ||  |                 
GTATTGCTGCAACGAAACTCAAGCAAATGGGCCCTGTCACTAAAAACGAATGGATCATGGTCGGTACAATGCTTCTTGCTGTCACTCTTTGGATCTGCGGgtaagtcttagatcactt-tcatgttttgtatcatac-cgttgattaaaaaaatctgagtattccatgggtttaatattatatgcag-------------

upper sequence: GLYMA15G06110.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv03s0017g00640.t01 (Vitis vinifera), 5'ss of exon 2
CCCTGGCTGCCAAGAAACTGGAAAGTATGGGCCCTGTCACTAAAAATGAATGGATTATGGTTGGCACAATGCTTCTTGCAGTGTCTTTGTGGATCTTTGGgtatgtcttctgcagtctattatatctacacctatgtatgtctatgcatgactttttttttttttttttactgatttctaagtttgt-tgattttttgggt---------
|| ||||||| || |  |||||   ||||||  ||||||| | | |||| ||| | ||| ||||||||||| |||||||||| ||||| ||| |||||||||| |        ||| | |  || ||   | ||  ||| | ||   ||    |    ||||  || | |   || | |||| |  | ||||    ||||          
CCATGGCTGCTAAAAGGCTGGAGCATATGGGTTCTGTCACAAGAGATGAGTGGGTGATGATTGGCACAATGATTCTTGCAGTATCTTTATGGGTCTTTGGgtaag-------aagtatctctta-ctttgcataattat-tataaa-atcttctagaattttacttgtgaaaaatctgtaaggtattgtgataacatgggcaaagatacc