1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TGAACCTTTTGCGGGCATTTGCCACGGGAGGTTATGCTGCCATGCAAAGGGTTAATCAATGGAATCTTGATTTCATGGAGCATAGTGAACAGGGAGACAGgcataatttttagccatttctaaatctatttctggattttgactcgtcagtgtttattaattcttattcttgtatatttgaaatgttttggatggatggt...
species | Glycine max |
transcript | GLYMA15G06020.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTTAATCAATGGAATCTTGATTTCATGGAGCATAGTGAACAGGGAGACAG GTACCGTGAATTAGCCCATAGAGTGGATGAGGCTCTTGGCTTCATGAATGTEST: gi|16996106|gb|BM085478.1|BM085478
genomic: GTTAATCAATGGAATCTTGATTTCATGGAGCATAGTGAACAGGGAGACAGgcataatttt ... tggccaacagGTACCGTGAATTAGCCCATAGAGTGGATGAGGCTCTTGGCTTCATGAATGT
EST: GTTAATCAATGGAATCTTGATTTCATGGAGCATAGTGAACAGGGAGACAG GTACCGTGAATTAGCCCATAGAGTGGATGAGGCTCTTGGCTTCATGAATGTEST: gi|20498272|gb|BQ273202.1|BQ273202
genomic: GTTAATCAATGGAATCTTGATTTCATGGAGCATAGTGAACAGGGAGACAGgcataatttt ... tggccaacagGTACCGTGAATTAGCCCATAGAGTGGATGAGGCTCTTGGCTTCATGAATGT
EST: GTTAATCAATGGAATCTTGATTTCATGGAGCATAGTGAACAGGGAGACAG GTACCGTGAATTAGCCCATAGAGTGGATGAGGCTCTTGGCTTCATGAATGTEST: gi|193551674|gb|FK508529.1|FK508529
genomic: GTTAATCAATGGAATCTTGATTTCATGGAGCATAGTGAACAGGGAGACAGgcataatttt ... tggccaacagGTACCGTGAATTAGCCCATAGAGTGGATGAGGCTCTTGGCTTCATGAATGT
EST: GTTAACCAATGGAATCTTGATTTCATGGAGCATAGTGAACAGGGAGACAG GTACCGTGAATTAGCCCATAGAGTGGATGAGGCTCTTGGCTTCATGAATGTEST: gi|208333215|gb|GE128234.1|GE128234
genomic: GTTAATCAATGGAATCTTGATTTCATGGAGCATAGTGAACAGGGAGACAGgcataatttt ... tggccaacagGTACCGTGAATTAGCCCATAGAGTGGATGAGGCTCTTGGCTTCATGAATGT
EST: GTTAATCAATGGAANCTTGATTTCATGGAGCATAGTGAACAGGGAGACAG GTACCGTGAATTAGCCCATAGAGTGGATGAGGCTCTTGGCTTCATGAATGT
genomic: GTTAATCAATGGAATCTTGATTTCATGGAGCATAGTGAACAGGGAGACAGgcataatttt ... tggccaacagGTACCGTGAATTAGCCCATAGAGTGGATGAGGCTCTTGGCTTCATGAATGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAACCTTTTGCGGGCATTTGCCACGGGAGGTTATGCTGCCATGCAAAGGGTTAATCAATGGAATCTTGATTTCATGGAGCATAGTGAACAGGGAGACAGgcataatttttagccatttctaaatctatttctggattttgactcgtcagtgtttattaattcttattcttgtatatttgaaatgttttggatggatggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA