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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAATCAGCCTCCCACTGATTCCGTGTCCAGTCTTAGCTTCAGTCCCAAAGCCAACTTCCTCGTCGCCACTTCTTGGGACAATCAGgtgcgtctttctctctctctcactttacttcgatagataggcataggcttatgtgcaacttttgcag

Basic information

species Glycine max
transcript GLYMA15G05740.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G05740.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os01g44394.1 (Oryza sativa), 5'ss of exon 2
GTGAATCAGCCTCCCACTGATTCCGTGTCCAGTCTTAGCTTCAGTCCCAAAGCCAACTTCCTCGTCGCCACTTCTTGGGACAATCAGgtgcgtctttctctctctc--tcacttta--cttcgatagataggcataggcttatgtgcaacttttgcag----------------------------------------------------
||||||| | | |||   || || || ||||| || |||||||||||||| || |||  |||||||||||| || |||||||| |||||| | |   | | | | |  || ||  |  | | ||    | |   |    || |     | |||||                                                       
GTGAATCCGGCGCCCGGGGACTCGGTTTCCAGCCTCAGCTTCAGTCCCAAGGCGAACCACCTCGTCGCCACATCATGGGACAACCAGgtgagccccgcccgcccaccgtcgctcgagccctagacgcttcgttttttattttttaaacatttttgtttgtttcggcgaatccgctagtggaatcctgagattgcggttggaattttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20814762|gb|BQ299240.1|BQ299240
EST:     GCTTCAGTCCCAAAGCCAACTTCCTCGTCGCCACTTCTTGGGACAATCAG                         GTTCGTTGTTGGGAGGTAGCACGGAATGGAGTAAATGTTGCCACTGTTCCC
genomic: GCTTCAGTCCCAAAGCCAACTTCCTCGTCGCCACTTCTTGGGACAATCAGgtgcgtcttt ... acttttgcagGTTCGTTGTTGGGAGGTAGCACGGAATGGAGTAAATGTTGCCACTGTTCCC
EST: gi|4301254|gb|AI443164.1|AI443164
EST:     GCTTCAGTCCCAAAGCCAACTTCCTCGTCGCCACTTCTTGGGACAATCAG                         GTTCGTTGTTGGGAGGTAGCACGGAATGGAGTAAATGTTGCCACTGTTCCC
genomic: GCTTCAGTCCCAAAGCCAACTTCCTCGTCGCCACTTCTTGGGACAATCAGgtgcgtcttt ... acttttgcagGTTCGTTGTTGGGAGGTAGCACGGAATGGAGTAAATGTTGCCACTGTTCCC