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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGAAGGGTAAGGATAGCATTGCTGCCCAAGGAAAACGCCGTTATGATCGCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggttaaatatttcgttataagtgcataggaattaggatctttttttttttgctgacaaaaatatatttttatttaaaatag

Basic information

species Glycine max
transcript GLYMA15G05670.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G05670.2 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os07g33860.1 (Oryza sativa), 5'ss of exon 2
CAAGAAGGGTAAGGATAGCATTGCTGCCCAAGGAAAACGCCGTTATGATCGCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggttaaatatttcgttataagtgcataggaattaggatctttttttttttgctgacaaaaatatatttttat--ttaaaatag---------------
||||||||||||||| ||| |  ||||||| ||||| ||||||||||| || || || || || |||||||| || || ||||| || |||||||||||||| |  ||      ||| |    || | |    ||   |  |  |   | | | ||   |   ||| ||||  | | ||  || |  ||                
CAAGAAGGGTAAGGACAGCCTGTCTGCCCAGGGAAAGCGCCGTTATGACCGTAAGCAGTCAGGATATGGTGGTCAGACCAAGCCTGTTTTCCACAAGAAGgtactgtgacagtttatat----atgattatgcagtgttgtgtgtgactctctgttcattag-aaacatatggtgtcatgattgatgtatcagtgctatgtgtct

upper sequence: GLYMA15G05670.2 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os07g33898.1 (Oryza sativa), 5'ss of exon 2
CAAGAAGGGTAAGGATAGCATTGCTGCCCAAGGAAAACGCCGTTATGATCGCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt--taaatatttcgttata-agtgc-ataggaattaggatctttttttt-------tttgctgacaaaaatatatttttatttaaaatag-----------------------------------------------------------------------------------------
||||||||||||||| ||| |  ||||||| ||||| ||||||||||| || || || || || |||||||| || || ||||| || ||||||||||||||    ||    |  |||| |  |||   |||||  |  |   | |  ||| ||  ||       | || || ||  | | | | | | || ||   |                                                                                          
CAAGAAGGGTAAGGACAGCCTGTCTGCCCAGGGAAAGCGCCGTTATGACCGTAAGCAGTCAGGATATGGTGGTCAGACCAAGCCTGTTTTCCACAAGAAGgtattgtgacagtttatatgtgattacgcagtgctgtgtgtgattgtctctcttcattagaaacatatggtgtcatgatt-tgtgtctgttcaatgcaaacatgtggcaataaccatcatgtagttttaatgtatctgactttcagctgtgcatttttcatgttatgatacatggttcctgttttcag

upper sequence: GLYMA15G05670.2 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os07g33880.1 (Oryza sativa), 5'ss of exon 2
CAAGAAGGGTAAGGATAGCATTGCTGCCCAAGGAAAACGCCGTTATGATCGCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggttaaatatttcgttataagtgcataggaattaggatctttttttttttgctgacaaaaatatatttttat--ttaaaatag----------------------------------------------------------------------------------------------------------------
||||||||||||||| ||| |  ||||||| ||||| ||||||||||| || || || || || |||||||| || || ||||| || |||||||||||||| |  ||      ||| |    || | |    ||   |  |  |   | | | ||   |   |||  ||   | | ||  || |  |||                                                                                                                
CAAGAAGGGTAAGGACAGCCTGTCTGCCCAGGGAAAGCGCCGTTATGACCGAAAGCAGTCAGGATATGGTGGTCAGACCAAGCCTGTTTTCCACAAGAAGgtactgtgacagtttatat----atgattatgcagtgttgtgtgtgactctctgttcattag-aaacgtacggtgtcatgattgatgtagcagtgatatgtgtctgtacaatgcatgtggcaataaccatcacgtagttttaattgcatgtggctttcagctgtgcatttttcatgttatgatacatggttcctgttttcag

upper sequence: GLYMA15G05670.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G009412_T01 (Zea mays), 5'ss of exon 2
CAAGAAGGGTAAGGATAGCATTGCTGCCCAAGGAAAACGCCGTTATGATCGCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt-taaatatttcgttata--agtgcataggaattaggatctttttttttttgctgacaaaaatatatttttatttaaaatag---------------------------------------------------------------
||||||||||||||||||| |  ||||||| ||||| ||||||||||| ||||| || || || |||||||| || || ||||| |||||||||||||||||      || ||  ||| |  || ||  | |||      | |      | ||| |   |  |||    |  ||      | | ||||||                                                                
CAAGAAGGGTAAGGATAGCCTGTCTGCCCAGGGAAAGCGCCGTTATGACCGCAAGCAGTCAGGATATGGTGGCCAGACCAAGCCTGTCTTCCACAAGAAGgtaatgaagtatacctatgtgattgtactattgctccatcaatccttcatctttgtccgttttgatgctagcatgaaag-actgaaaataactaccatttctaaatgtctgttgggtgcacagattgggatatgacaaatgttgtgattttcag

upper sequence: GLYMA15G05670.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G125527_T02 (Zea mays), 5'ss of exon 2
CAAGAAGGGTAAGGATAGCATTGCTGCCCAAGGAAAACGCCGTTATGATCGCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgtt-cgttggttaaatatttcgttataagtgcataggaattaggatctttttttttttgc-tgac-aaaaatatatttttatttaaaatag-------------------------------------------------------
 |||||||| ||||||||| |  ||||||| ||||| ||||||||||| ||||| || || || |||||||| || || ||||| |||||||||||||||||   |  |  ||  |||||  || ||  |  |      |  |  |   |  |    ||  || |  ||||||| |    |||  ||||                                                         
TAAGAAGGGCAAGGATAGCCTGTCTGCCCAGGGAAAGCGCCGTTATGACCGCAAGCAGTCAGGATATGGTGGTCAGACCAAGCCTGTCTTCCACAAGAAGgtaatgcagcatatctatttgattgtacttatacctttgtctgttttgatgctagcatgaatgtctgaaaatatctgcgaattctaaatgcctgttcagtgattaatgtgggatatgacaaatgagattgtatttatacctttcag

upper sequence: GLYMA15G05670.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G103059_T01 (Zea mays), 5'ss of exon 2
CAAGAAGGGTAAGGATAGCATTGCTGCCCAAGGAAAACGCCGTTATGATCGCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgtt-cgttggttaaatatttcgttataagtgcataggaattaggatctttttttttttgc-tgac-aaaaatatatttttatttaaaatag-------------------------------------------------------
 |||||||| |||||||||||  ||||||| ||||| || |||||||| ||||| || || ||  ||||||| || || ||||| |||||||||||||||||   |     ||  |||||  || ||  |  |      |  |  |   |  |    ||  || | | |||||| |    |||  ||||                                                         
TAAGAAGGGCAAGGATAGCATGTCTGCCCAGGGAAAGCGTCGTTATGACCGCAAGCAGTCAGGACATGGTGGTCAGACCAAGCCTGTCTTCCACAAGAAGgtaatgcaacatatctatttgattgtacttatacctttgtctgttttgatggtagcatgaatgtctagaaatatctgcgaattctaaatgcctgttgagagaataatttgggatatgacaaatgtgattgtattaatacctttcag

upper sequence: GLYMA15G05670.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G160351_T03 (Zea mays), 5'ss of exon 2
CAAGAAGGGTAAGGATAGCATTGCTGCCCAAGGAAAACGCCGTTATGATCGCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggttaaatatttcgttataagtgcataggaattaggatct-----ttttttttttgctgacaaaaatatatttttatttaaaatag----------
|||||| |||||||||||| || | || ||||| || || |||||||| |||||||| || || |||||||| || || ||||| || ||||||||||||||||       ||||  |    | |  |    ||  |||||    ||      |  ||||    |    ||     ||  ||  || |  |            
CAAGAAAGGTAAGGATAGCCTTTCAGCTCAAGGGAAGCGACGTTATGACCGCAAACAGTCTGGATATGGTGGTCAGACAAAGCCTGTTTTCCACAAGAAGgttcaaca--caaattctctactgtttgca-gtaccaattacatactgaaggctgcttttggagttcttaatgcggatcctttatttacttgcttcctaacat

upper sequence: GLYMA15G05670.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G160351_T01 (Zea mays), 5'ss of exon 2
CAAGAAGGGTAAGGATAGCATTGCTGCCCAAGGAAAACGCCGTTATGATCGCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggttaaatatttcgttataagtgcataggaattaggatct-----ttttttttttgctgacaaaaatatatttttatttaaaatag------------------------------
|||||| |||||||||||| || | || ||||| || || |||||||| |||||||| || || |||||||| || || ||||| || ||||||||||||||||       ||||  |    | |  |    ||  |||||    ||      |  ||||    |    ||     ||  ||  || |  |                                
CAAGAAAGGTAAGGATAGCCTTTCAGCTCAAGGGAAGCGACGTTATGACCGCAAACAGTCTGGATATGGTGGTCAGACAAAGCCTGTTTTCCACAAGAAGgttcaaca--caaattctctactgtttgca-gtaccaattacatactgaaggctgcttttggagttcttaatgcggatcctttatttacttgcttcctaacattaactcttcggtctattcag

upper sequence: GLYMA15G05670.2 (Glycine max), 5'ss of exon 2
lower sequence: AT4G14320.1 (Arabidopsis thaliana), 5'ss of exon 2
CAAGAAGGGTAAGGATAGCATTGCTGCCCAAGGAAAACGCCGTTATGATCGCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgt-----------tcgttggttaaatatttcgttataag----tgcataggaa-----ttaggatctttttttttttgctgacaaaaatatatttttatttaaaatag-----------------------------------------
 ||||| ||||| |||||| |||||||||||||||| || ||||||||||| |||||||| |||||||| || || || |||||||||||||||||||||||           || |||  |  || | |  |||        |   |  |||     ||||||| |     ||    |||  ||| || | || |       | | |                                         
TAAGAAAGGTAAAGATAGCCTTGCTGCCCAAGGAAAGCGTCGTTATGATCGTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgcttttccttgtcttgatctctaattactgtcttctatgtgagaaccaatttaggatttcagaattgactctgtgaaatatgtcttataggaatgatttgttaattggaccttgctcattatttgtctttctttggaacag

upper sequence: GLYMA15G05670.2 (Glycine max), 5'ss of exon 2
lower sequence: AT3G23390.1 (Arabidopsis thaliana), 5'ss of exon 2
CAAGAAGGGTAAGGATAGCATTGCTGCCCAAGGAAAACGCCGTTATGATCGCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgtt-cgttggttaa-atatttcg-ttataagtgca-taggaattaggatctttttttttttgctgacaaaaatatattt--ttatttaaaatag-------------------------------------------------------------------------------------
|||||||||||| || ||  ||||||| |||||||| || |||||||| || |||||||| ||||||||||| || |||||||| ||||||||||| |||||  | ||| |||  ||   | | || |   | || |  |||||||| |||  ||  ||    |||   |  | ||       ||||| | |||                                                                                     
CAAGAAGGGTAAAGACAGTCTTGCTGCTCAAGGAAAGCGTCGTTATGACCGTAAACAATCTGGTTATGGTGGTCAGACTAAGCCTGTCTTCCACAAAAAGgtaacattgattatcatgcattgattgttttttcagtttgaattagg-tctagttagttgaaatgaggtagttttaaggaaccatttatagtagaattttggaagtgagctgtgaggaaacagacattccaatagtctcagttttggactgagatacatcttgtgaatcttgttaacag

upper sequence: GLYMA15G05670.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv01s0011g02090.t01 (Vitis vinifera), 5'ss of exon 2
CAAGAAGGGTAAGGATAGCATTGCTGCCCAAGGAAAACGCCGTTATGATCGCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgt-----tcgttggttaaatatt-tcgttataagtgca--taggaattaggatctttttttttttgctgacaaaaat-atatttttatttaaaatag-----------------------------------------------------------
|||||||||||| |||||| | |||||||||||||| ||| | || || ||||||||||| |||||||| ||||| || || ||||||||||||||||||||      | ||  |     ||| || |  |   ||||  ||  |||| |  || | ||| || |  ||| | |  |  ||   || || |||   |                                                           
CAAGAAGGGTAAAGATAGCTTAGCTGCCCAAGGAAAGCGCAGGTACGACCGCAAACAATCAGGTTATGGAGGACAGACAAAACCCGTCTTCCACAAGAAGgtaaagaccctttctctggcattctcctcttccttgcaattatcaatt-gtttcatgtttcttataatgagagagcttgtaggatttttcaaatctgtagtagaagcttataagggcaaatccccatagcattgatccatctttttctcaaaccag

upper sequence: GLYMA15G05670.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv13s0064g00880.t01 (Vitis vinifera), 5'ss of exon 2
CAAGAAGGGTAAGGATAGCATTGCTGCCCAAGGAAAACGCCGTTATGATCGCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgtt----cgttggttaaatatttcgttataagtgcataggaattagg--atctttttt--tttttgctgacaaaaatatatttttatttaaaatag----
||||||||| ||||||||| | || || ||||| || ||  | |||||||||||||| || |||||||| ||||| || || |||||||||||||| |||||     |  |  |   |  |  |     |  |   |  || ||     ||||  | |  || ||  |||  |  || || ||| || ||| |||     
CAAGAAGGGCAAGGATAGCTTAGCCGCACAAGGGAAGCGGAGGTATGATCGCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAGgtaaacaccctcatctcacttccctcggcatcttttttagatttgaataatctaatctggttatttttgaacatgatctaatttcatgtaatataatgag

upper sequence: GLYMA15G05670.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv01s0011g02080.t01 (Vitis vinifera), 5'ss of exon 3
CAAGAAGGGTAAGGATAGCATTGCTGCCCAAGGAAAACGCCGTTATGATCGCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggttaaatatttcgttataagtgcataggaattaggatctttttttt---tttgctgacaaaaatat-----atttttatttaaaatag------------------------------------------------------
|||||| || || |||||| |||| ||||| || |||||||| |||||||| ||||| || || ||||| ||||| || || || ||||||||||| |||||         |  ||| || ||||   | | | | ||||   | | |||||||   ||   ||| |    | |     |||  |||||| | |                                                        
CAAGAAAGGAAAAGATAGCCTTGCAGCCCAGGGGAAACGCCGGTATGATCGGAAACAGTCAGGCTATGGAGGACAGACCAAACCTGTCTTCCACAAAAAGgta-acaatccatctatatccttatt--tccttggaaattttaaccctttttttaagttgtgtgatacttttctcagagattgctatttatatttttatatgccaaattttcataacctttgattgcttttcacctaatcacctaatcag

upper sequence: GLYMA15G05670.2 (Glycine max), 5'ss of exon 2
lower sequence: EDP05070 (Chlamydomonas reinhardtii), 5'ss of exon 3
CAAGAAGGGTAAGGATAGCATTGCTGCCCAAGGAAAACGCCGTTATGATCGCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggttaaatatttcg-----ttataagtgcatag-gaattaggatctttttttttttgctgacaaaaatatatttttatttaaaatag------
                                | || ||||| || || ||||| || || ||||| ||||| || || ||||||||||||||||||||||| ||      |  |    ||     ||||  | | ||   ||| | |   |  |       ||  |        |   |      |     ||      
--------------------------------GCAAGCGCCGCTACGACCGCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtgcgcgacagagctggcgcggcatgttatgggcgtatcttgaagtggtgaccgtggaggggtgggggtggggtgaggctgagtgctggcgcagcggatg

upper sequence: GLYMA15G05670.2 (Glycine max), 5'ss of exon 2
lower sequence: EFJ07113 (Selaginella moellendorffii), 5'ss of exon 3
CAAGAAGGGTAAGGATAGCATTGCTGCCCAAGGAAAACGCCGTTATGATCGCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggttaaatatttcgttataagtgcataggaattaggatctttttttttttgctgacaaaaatatatttttatttaaaatag
                                | ||  | ||||| |||||||| ||||| || ||||| || ||||| |||||||| || |||||||||||  |    ||         | | |   | ||   ||  || |  || | |   | || |   |  |||  |                
--------------------------------GTAAGAGGCGTTACGATCGCAAGCAATCTGGCTATGGCGGTCAAACGAAGCCCGTGTTTCACAAGAAGgtaggaaactttcgctgcctgctgtgc-tccaatcgatctaag--ctctctccctgtgattgaatgaatgcag---------------

upper sequence: GLYMA15G05670.2 (Glycine max), 5'ss of exon 2
lower sequence: EFJ05955 (Selaginella moellendorffii), 5'ss of exon 3
CAAGAAGGGTAAGGATAGCATTGCTGCCCAAGGAAAACGCCGTTATGATCGCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggttaaa-tatttcgttataagtgcataggaattaggatctttttttttttgctgacaaaaatatatttttatttaaaatag
                                | ||  | ||||| |||||||| ||||| || ||||| || ||||| |||||||| || |||||||||||  |  | ||    |||| |     || | ||   ||  || |  || | |   |  | |   |  |||  |                
--------------------------------GTAAGAGGCGTTACGATCGCAAGCAATCTGGCTATGGCGGCCAAACGAAGCCCGTGTTTCACAAGAAGgtaggaagctttcgctattcca----aattccaatcgatctaag--ctctctccctgcgattgaatgaatgcag---------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13791555|gb|BG654146.1|BG654146
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|192303123|gb|FG994241.1|FG994241
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|31467235|gb|CD409263.1|CD409263
EST:     GCAAACAATCCGGTTATGGTGGACCAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|208118739|gb|GD919682.1|GD919682
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTG
EST: gi|18041170|gb|BM309455.1|BM309455
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|151412143|gb|EV281955.1|EV281955
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|163928775|gb|EH038599.1|EH038599
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|208062287|gb|GD857635.1|GD857635
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTG
EST: gi|6847594|gb|AW349803.1|AW349803
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|192298522|gb|FG989213.1|FG989213
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|58014790|gb|CX701532.1|CX701532
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|208106267|gb|GD903298.1|GD903298
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|5761219|gb|AI966582.1|AI966582
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCTTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|21602280|gb|BQ612602.1|BQ612602
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|15815644|gb|BI787919.1|BI787919
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|151398638|gb|EV268509.1|EV268509
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|298197799|gb|HO039338.1|HO039338
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|193521346|gb|FK478595.1|FK478595
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTT
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTT
EST: gi|31464065|gb|CD406093.1|CD406093
EST:     GCATACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|58024233|gb|CX710974.1|CX710974
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|4313639|gb|AI460758.1|AI460758
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|58015097|gb|CX701839.1|CX701839
EST:     GCAAACAATCCGGTTATGGTGGACAAATTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|192332711|gb|FK025368.1|FK025368
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCATGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|31311850|gb|CD397053.1|CD397053
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|31468057|gb|CD410085.1|CD410085
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|151409643|gb|EV279451.1|EV279451
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|18848936|gb|BM568046.1|BM568046
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|208172807|gb|GD972042.1|GD972042
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|7691471|gb|AW759598.1|AW759598
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|58014502|gb|CX701244.1|CX701244
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|6747108|gb|AW317564.1|AW317564
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|24135500|gb|BU926010.1|BU926010
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|16280944|gb|BI944229.1|BI944229
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|192303122|gb|FG994240.1|FG994240
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|208134996|gb|GD928771.1|GD928771
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAAGAAGGGTAAGGATAGCATTGCTGCCCAAGGAAAACGCCGTTATGATCGCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggttaaatatttcgttataagtgcataggaattaggatctttttttttttgctgacaaaaatatatttttatttaaaatag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG