1 5' 3' | 2 5' 3' | 3 5' 3' |
GGCCGACGAGGAACCTGTTGATCAGAAGAGATATCTTGAAGAGTCTTGCAAACCAAAATGTGTAAAACCATTACTGGAATACCAGgtgtgcttttttgaagtgtagaataataagctgtatcatttgaagatgatatttattcttaatttaaacactattcttttattttctggattttaaaatc...
species | Glycine max |
transcript | GLYMA15G05620.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTGAAGAGTCTTGCAAACCAAAATGTGTAAAACCATTACTGGAATACCAG GCGTGCATTAAAAGGATACATGGTGATGATTCTGGGCAGAAACACTGCACTEST: gi|7639289|gb|AW733615.1|AW733615
genomic: TTGAAGAGTCTTGCAAACCAAAATGTGTAAAACCATTACTGGAATACCAGgtgtgctttt ... attgctacagGCGTGCATTAAAAGGATACATGGTGATGATTCTGGGCAGAAACACTGCACT
EST: TTGAAGAGTCTTGCAAACCAAAATGTGTAAAACCATTACTGGAATACCAG GCGTGCATTAAAAGGATACATGGTGATGATTCTGGGCAGAAACACTGCACTEST: gi|58014473|gb|CX701215.1|CX701215
genomic: TTGAAGAGTCTTGCAAACCAAAATGTGTAAAACCATTACTGGAATACCAGgtgtgctttt ... attgctacagGCGTGCATTAAAAGGATACATGGTGATGATTCTGGGCAGAAACACTGCACT
EST: TTGAAGAGTCTTGCAAACCAAAATGTGTAAAACCATTACTGGAATACCAG GCGTGCATTAAAAGGATACATGGTGATGATTCTGGGCAGAAACACTGCACTEST: gi|193393950|gb|FK358081.1|FK358081
genomic: TTGAAGAGTCTTGCAAACCAAAATGTGTAAAACCATTACTGGAATACCAGgtgtgctttt ... attgctacagGCGTGCATTAAAAGGATACATGGTGATGATTCTGGGCAGAAACACTGCACT
EST: TGAAGAGTCTTGCAAAACCAAAATGTGTAAAACCATTACTGGAATACCAG GCGTGCATTAAAAGGATACATAGGTGATGATEST: gi|51343117|gb|CO983850.1|CO983850
genomic: TGAAGAGTCTTGCAAA-CCAAAATGTGTAAAACCATTACTGGAATACCAGgtgtgctttt ... attgctacagGCGTGCATTAAAAGGATACAT-GGTGATGAT
EST: TTGAAGAGTCTTGCAAACCAAAATGTGTAAAACCATTACTGGAATACCAG GCGTGCATTAAAAGGATACATGGTGATGATTCTGGGCAGAAACACTGCACTEST: gi|14999290|gb|BI320299.1|BI320299
genomic: TTGAAGAGTCTTGCAAACCAAAATGTGTAAAACCATTACTGGAATACCAGgtgtgctttt ... attgctacagGCGTGCATTAAAAGGATACATGGTGATGATTCTGGGCAGAAACACTGCACT
EST: TTGAAGAGTCTTGCAAACCAAAATGTGTAAAACCATTACTGGAATACCAG GCGTGCATTAAAAGGATACATGGTGATGATTCTGGGCAGAAACACTGCACTEST: gi|193431244|gb|FK396850.1|FK396850
genomic: TTGAAGAGTCTTGCAAACCAAAATGTGTAAAACCATTACTGGAATACCAGgtgtgctttt ... attgctacagGCGTGCATTAAAAGGATACATGGTGATGATTCTGGGCAGAAACACTGCACT
EST: TTGAAGAGTCTTGCAAACCAAAATGTGTAAAACCATTACTGGAATACCAG GCGTGCATTAAAAGGATACATGGTGATGATEST: gi|12772718|gb|BG237636.1|BG237636
genomic: TTGAAGAGTCTTGCAAACCAAAATGTGTAAAACCATTACTGGAATACCAGgtgtgctttt ... attgctacagGCGTGCATTAAAAGGATACATGGTGATGAT
EST: AACCATTACTGGAATACCAG GCGTGCATTAAAAGGATACATGGTGATGATTCTGGGCAGAAACACTGCACTEST: gi|18733830|gb|BM527835.1|BM527835
genomic: AACCATTACTGGAATACCAGgtgtgctttt ... attgctacagGCGTGCATTAAAAGGATACATGGTGATGATTCTGGGCAGAAACACTGCACT
EST: TTGAAGAGTCTTGCAAACCAAAATGTGTAAAACCATTACTGGAATACCAG GCGTGCATTAAAAGGATACATGGTGATGATTCTGGGCAGAAACACTGCACTEST: gi|7639244|gb|AW733571.1|AW733571
genomic: TTGAAGAGTCTTGCAAACCAAAATGTGTAAAACCATTACTGGAATACCAGgtgtgctttt ... attgctacagGCGTGCATTAAAAGGATACATGGTGATGATTCTGGGCAGAAACACTGCACT
EST: TTGAAGAGTCTTGCAAACCAAAATGTGTAAAACCATTACTGGAATACCAG GCGTGCATTAAAAGGATACATGGTGATGATTCTGGGCAGAAACACTGCACTEST: gi|12690066|gb|BG156402.1|BG156402
genomic: TTGAAGAGTCTTGCAAACCAAAATGTGTAAAACCATTACTGGAATACCAGgtgtgctttt ... attgctacagGCGTGCATTAAAAGGATACATGGTGATGATTCTGGGCAGAAACACTGCACT
EST: TTGAAGAGTCTTGCAAACCAAAATGTGTAAAACCATTACTGGAATACCAG GCGTGCATTAAAAGGATACATGGTGATGATTCTGGGCAGAAACACTGCACTEST: gi|20814521|gb|BQ298999.1|BQ298999
genomic: TTGAAGAGTCTTGCAAACCAAAATGTGTAAAACCATTACTGGAATACCAGgtgtgctttt ... attgctacagGCGTGCATTAAAAGGATACATGGTGATGATTCTGGGCAGAAACACTGCACT
EST: TTGAAGAGTCTTGCAAACCAAAATGTGTAAAACCATTACTGGAATACCAG GCGTGCATTAAAAGGATACATGGTGATGATTCTGGGCAGAAACACTGCACTEST: gi|7146375|gb|AW508297.1|AW508297
genomic: TTGAAGAGTCTTGCAAACCAAAATGTGTAAAACCATTACTGGAATACCAGgtgtgctttt ... attgctacagGCGTGCATTAAAAGGATACATGGTGATGATTCTGGGCAGAAACACTGCACT
EST: TTGAAGAGTCTTGCAAACCAAAATGTGTAAAACCATTACTGGAATACCAG GCGTGCATTAAAAGGATACATGGTGATGATTCTGGGCAGAAACACTGCACTEST: gi|17402023|gb|BM178805.1|BM178805
genomic: TTGAAGAGTCTTGCAAACCAAAATGTGTAAAACCATTACTGGAATACCAGgtgtgctttt ... attgctacagGCGTGCATTAAAAGGATACATGGTGATGATTCTGGGCAGAAACACTGCACT
EST: TTGAAGAGTCTTGCAAACCAAAATGTGTAAAACCATTACTGGAATACCAG GCGTGCATTAAAAGGATACATGGTGATGATTCTGGGCAGAAACACTGCACTEST: gi|22931573|gb|BU548712.1|BU548712
genomic: TTGAAGAGTCTTGCAAACCAAAATGTGTAAAACCATTACTGGAATACCAGgtgtgctttt ... attgctacagGCGTGCATTAAAAGGATACATGGTGATGATTCTGGGCAGAAACACTGCACT
EST: TTGAAGAGTCTTGCAAACCAAAATGTGTAAAACCATTACTGGAATACCAG GCGTGCATTAAAAGGATACATGGTGATGATTCTGGGCAGAAACACTGCACTEST: gi|58023473|gb|CX710214.1|CX710214
genomic: TTGAAGAGTCTTGCAAACCAAAATGTGTAAAACCATTACTGGAATACCAGgtgtgctttt ... attgctacagGCGTGCATTAAAAGGATACATGGTGATGATTCTGGGCAGAAACACTGCACT
EST: TTGAAGAGTCTTGCAAACCAAAATGTGTAAAACCATTACTGGAATACCAG GCGTGCATTAAAAGGATACATGGTGATGATTCTGGGCAGAAACACTGCACTEST: gi|10848067|gb|BF070624.1|BF070624
genomic: TTGAAGAGTCTTGCAAACCAAAATGTGTAAAACCATTACTGGAATACCAGgtgtgctttt ... attgctacagGCGTGCATTAAAAGGATACATGGTGATGATTCTGGGCAGAAACACTGCACT
EST: TTGAAGAGTCTTGCAAACCAAAATGTGTAAAACCATTACTGGAATACCAG GCGTGCATTAAAAGGATACATGGTGATGATTCTGGGCAGAAACACTGCACTEST: gi|151400909|gb|EV270723.1|EV270723
genomic: TTGAAGAGTCTTGCAAACCAAAATGTGTAAAACCATTACTGGAATACCAGgtgtgctttt ... attgctacagGCGTGCATTAAAAGGATACATGGTGATGATTCTGGGCAGAAACACTGCACT
EST: TTGAAGAGTCTTGCAAACCAAAATGTGTAAAACCATTACTGGAATACCAG GCGTGCATTAAAAGGATACATGGTGATGATTCTGGGCAGAAACACTGCACTEST: gi|13251785|gb|BG362688.1|BG362688
genomic: TTGAAGAGTCTTGCAAACCAAAATGTGTAAAACCATTACTGGAATACCAGgtgtgctttt ... attgctacagGCGTGCATTAAAAGGATACATGGTGATGATTCTGGGCAGAAACACTGCACT
EST: TTGAAGAGTCTTGCAAACCAAAATGTGTAAAACCATTACTGGAATACCAG GCGTGCATTAAAAGGATACATGGTGATGATTCTGGGCAGAAACACTGCACTEST: gi|18848956|gb|BM568066.1|BM568066
genomic: TTGAAGAGTCTTGCAAACCAAAATGTGTAAAACCATTACTGGAATACCAGgtgtgctttt ... attgctacagGCGTGCATTAAAAGGATACATGGTGATGATTCTGGGCAGAAACACTGCACT
EST: TTGAAGAGTCTTGCAAACCAAAATGTGTAAAACCATTACTGGAATACCAG GCGTGCATTAAAAGGATACATGGTGATGATTCTGGGCAGAAACACTGCACTEST: gi|6914391|gb|AW395921.1|AW395921
genomic: TTGAAGAGTCTTGCAAACCAAAATGTGTAAAACCATTACTGGAATACCAGgtgtgctttt ... attgctacagGCGTGCATTAAAAGGATACATGGTGATGATTCTGGGCAGAAACACTGCACT
EST: TTGAAGAGTCTTGCAAACCAAAATGTGTAAAACCATTACTGGAATACCAG GCGTGCATTAAAAGGATACATGGTGATGATTCTGGGCAGAAACACTGCACTEST: gi|151410688|gb|EV280503.1|EV280503
genomic: TTGAAGAGTCTTGCAAACCAAAATGTGTAAAACCATTACTGGAATACCAGgtgtgctttt ... attgctacagGCGTGCATTAAAAGGATACATGGTGATGATTCTGGGCAGAAACACTGCACT
EST: TTGAAGAGTCTTGCAAACCAAAATGTGTAAAACCATTACTGGAATACCAG GCGTGCATTAAAAGGATACATGGTGATGATTCTGGGCAGAAACACTGCACTEST: gi|18726815|gb|BM523771.1|BM523771
genomic: TTGAAGAGTCTTGCAAACCAAAATGTGTAAAACCATTACTGGAATACCAGgtgtgctttt ... attgctacagGCGTGCATTAAAAGGATACATGGTGATGATTCTGGGCAGAAACACTGCACT
EST: TTGAAGAGTCTTGCAAACCAAAATGTGTAAAACCATTACTGGAATACCAG GCGTGCATTAAAAGGATACATGGTGATGATTCTGGGCAGAAACACTGCACTEST: gi|18848720|gb|BM567832.1|BM567832
genomic: TTGAAGAGTCTTGCAAACCAAAATGTGTAAAACCATTACTGGAATACCAGgtgtgctttt ... attgctacagGCGTGCATTAAAAGGATACATGGTGATGATTCTGGGCAGAAACACTGCACT
EST: TTGAAGAGTCTTGCAAACCAAAATGTGTAAAACCATTACTGGAATACCAG GCGTGCATTAAAAGGATACATGGTGATGATTCTGGGCAGAAACACTGCACTEST: gi|254315068|gb|GR830061.1|GR830061
genomic: TTGAAGAGTCTTGCAAACCAAAATGTGTAAAACCATTACTGGAATACCAGgtgtgctttt ... attgctacagGCGTGCATTAAAAGGATACATGGTGATGATTCTGGGCAGAAACACTGCACT
EST: TTGAAGAGTCTTGCAAACCAAAATGTGTAAAACCATTACTGGAATACCAG GCGTGCATTAAAAGGATACATGGTGATGATTCTGGGCAGAAACACTGCACTEST: gi|151401498|gb|EV271312.1|EV271312
genomic: TTGAAGAGTCTTGCAAACCAAAATGTGTAAAACCATTACTGGAATACCAGgtgtgctttt ... attgctacagGCGTGCATTAAAAGGATACATGGTGATGATTCTGGGCAGAAACACTGCACT
EST: TTGAAGAGTCTTGCAAACCAAAATGTGTAAAACCATTACTGGAATACCAG GCGTGCATTAAAAGGATACATGGTGATGATTCTGGGCAGAAACACTGCACTEST: gi|23734278|gb|BU765362.1|BU765362
genomic: TTGAAGAGTCTTGCAAACCAAAATGTGTAAAACCATTACTGGAATACCAGgtgtgctttt ... attgctacagGCGTGCATTAAAAGGATACATGGTGATGATTCTGGGCAGAAACACTGCACT
EST: TTGAAGAGTCTTGCAAACCAAAATGTGTAAAACCATTACTGGAATACCAG GCGTGCATTAAAAGGATACATGGTGATGATTCTGGGCAGAAACACTGCACT
genomic: TTGAAGAGTCTTGCAAACCAAAATGTGTAAAACCATTACTGGAATACCAGgtgtgctttt ... attgctacagGCGTGCATTAAAAGGATACATGGTGATGATTCTGGGCAGAAACACTGCACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCCGACGAGGAACCTGTTGATCAGAAGAGATATCTTGAAGAGTCTTGCAAACCAAAATGTGTAAAACCATTACTGGAATACCAGgtgtgcttttttgaagtgtagaataataagctgtatcatttgaagatgatatttattcttaatttaaacactattcttttattttctggattttaaaatc
- - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - TGAAGA