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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGAATAAGGATGTACTTCCCAAGGGCTGGTTCAAAGCTTACTCCTCCGCATAGTTCAATAAACTTCTACTGGAAAGATTATTGCCCTATGGTCTTCAGgtatttattaacttaatgtataccatgcttttataactaagaaatttagagaaaaatacttttaagtaaccatggtgatacagaatgtcaacaagttatg...

Basic information

species Glycine max
transcript GLYMA15G05150.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G05150.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv12s0034g01790.t01 (Vitis vinifera), 5'ss of exon 5
CAAGAATAAGGATGTACTTCCCAAGGGCTGGTTCAAAGCTTACTCCTCCGCATAGTTCAATAAACTTCTACTGGAAAGATTATTGCCCTATGGTCTTCAGgtatttattaacttaatgtataccatgcttttataactaagaaatttagagaaaaatacttttaagtaa-ccatggtgatacaga-atgtcaacaagttatg
| |||||||| ||||| || || ||    |||||  || | || ||||| ||   ||| ||  | ||||| ||||| || |||||||||||||||||||||||||||| ||  | |||  |   ||   | | |   ||   |  | |        | |     | |||  | |  |  | |||  || |   |  ||    
CCAGAATAAGAATGTATTTTCCCAGAAAAGGTTCCCAGTTCACACCTCCACACTATTCTATCGATTTCTATTGGAAGGACTATTGCCCTATGGTCTTCAGgtatttatcaatctcatggttgatatatgtatctcgatattgacctaaattttccttgcacaggattaagtcttaatagtgcaggcatcttttcttgtac--

upper sequence: GLYMA15G05150.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ31327 (Selaginella moellendorffii), 5'ss of exon 2
CAAGAATAAGGATGTACTTCCCAAGGGCTGGTTCAAAGCTTACTCCTCCGCATAGTTCAATAAACTTCTACTGGAAAGATTATTGCCCTATGGTCTTCAGgtatttattaacttaatgtataccatgcttttataactaagaaatttagagaaaaatacttttaagtaaccatggtgatacagaatgtcaacaagttatg
| ||| | |||||| |||| ||  | || || ||  | ||||| ||| ||||    ||| |  ||||| | ||||||||||||||||| |||||||||||||  |  ||  | | |  | |  |     |||   | |  | | || |       |  || |   |||    |  |  |   | ||||||          
CCAGATTCAGGATGAACTTTCCTCGTGCAGGGTCTCAACTTACGCCTTCGCACCAGTCAGTGGACTTCAAATGGAAAGATTATTGCCCAATGGTCTTCAGgtcctacttttccttagctctttcg---atttcccatttggcatttcatcttttgacgctct---gtacagttttttttgttgcatgtcag---------

upper sequence: GLYMA15G05150.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ34272 (Selaginella moellendorffii), 5'ss of exon 2
CAAGAATAAGGATGTACTTCCCAAGGGCTGGTTCAAAGCTTACTCCTCCGCATAGTTCAATAAACTTCTACTGGAAAGATTATTGCCCTATGGTCTTCAGgtatttattaacttaatgtataccatgcttttataactaagaaatttagagaaaaatacttttaagtaaccatggtgatacagaatgtcaacaagttatg
| ||| | |||||| |||| ||  | || || ||  | ||||| ||| ||||    ||| |  ||||| | ||||||||||||||||| |||||||||||||  |  ||  | | |  | | ||     |||   | |  | | || |       |  || |   |||    |  |  |   | ||||||          
CCAGATTCAGGATGAACTTTCCTCGTGCAGGGTCTCAACTTACGCCTTCGCACCAGTCAGTGGACTTCAAATGGAAAGATTATTGCCCGATGGTCTTCAGgtcctacttttccttagctcttccg---atttcccatttggcatttcatcttttgacgctct---gtacagttttttttgttgcatgtcag---------