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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGTTGTCTGTGGGGTATTCTTTGGATCAGATACCAAACGATATAACGAAGAAGACACCGGCTAGTTTTGAGCCCTCAATTGATTATGTGGTTACTAAGgtaaggagcttagttgttgctgatattgccatcatataccaatgtgacttggtaggatgtttttacttttaaattgtaaattttgtataggtaataagtc...

Basic information

species Glycine max
transcript GLYMA15G05020.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G05020.2 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os01g38970.1 (Oryza sativa), 5'ss of exon 1
AAAGTTGTCTGTGGGGTATTCTTTGGATCAGATACCAAACGATATAACGAAGAAGACACCGGCTAGTTTTGAGCCCTCAATTGATTATGTGGTTACTAAGgtaaggagcttagtt--gttgctgatattgccatcatataccaatgtgacttggtaggatgtttttacttttaaattgtaaattttgtataggtaataagtc---
|||| | ||||| || ||| ||||||| ||||| ||||| ||||| ||||||||||| || ||||| |||||||| || ||||| || ||||| ||||||||  |    ||   |  ||| || | ||| |     |    |||||  | |||||    |||       ||  | || | |   || | |  | |   |      
AAAGCTCTCTGTAGGTTATACTTTGGACCAGATTCCAAATGATATTACGAAGAAGACTCCTGCTAGCTTTGAGCCTTCCATTGACTACGTGGTCACTAAGgtttgctttttccctctgtttctaagatttc-----ttgggcaatgatatttggtgcactgtgcaattgttgcatttttcatccttattttagaagctatcttgc

upper sequence: GLYMA15G05020.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G700683_T01 (Zea mays), 5'ss of exon 1
AAAGTTGTCTGTGGGGTATTCTTTGGATCAGATACCAAACGATATAACGAAGAAGACACCGGCTAGTTTTGAGCCCTCAATTGATTATGTGGTTACTAAGgtaaggagcttagttgttgctgatattgccatcatataccaatgtgactt-----ggtaggatgtttttacttttaaattgtaaattttgtataggtaataagtc
 ||| | || || || ||  || | |||||||| || || ||||| || |||||||| || ||||| || ||||| || ||||||||||||||||| ||||||     |  |  |||  || |  || |     | |   ||||    ||     |  |  |||  | | |  |  |  | ||| || | ||||     |     
GAAGCTCTCAGTAGGCTACACTCTAGATCAGATTCCCAATGATATTACCAAGAAGACTCCAGCTAGCTTCGAGCCTTCCATTGATTATGTGGTTACAAAGgtattattccaatctgtctcttagctttcttaattgtgtgaatgaagtttttcctgcaaatatgcatctgcagtacatatttaacttctctatattcctt-----

upper sequence: GLYMA15G05020.2 (Glycine max), 5'ss of exon 2
lower sequence: AT1G29900.1 (Arabidopsis thaliana), 5'ss of exon 1
AAAGTTGTCTGTGGGGTATTCTTTGGATCAGATACCAAACGATATAACGAAGAAGACACCGGCTAGTTTTGAGCCCTCAATTGATTATGTGGTTACTAAGgtaagg--------agcttagttgttgctgatattgccatcatataccaatgtgacttggtaggatgtttttacttttaaattgtaaattttgtataggtaataagtc--------------------------------------
 ||||||||||| || ||| | ||||||||||| || || ||||| |||| ||| ||||||||||| || |||||||| || ||||||||||| ||||||||  |         |  || |   ||  |  | |||| |    | |      |||||| | | ||| |    || | ||     |  ||  | ||||      ||  |                                      
CAAGTTGTCTGTTGGCTATACCTTGGATCAGATTCCTAATGATATCACGAGGAAAACACCGGCTAGCTTCGAGCCCTCCATCGATTATGTGGTGACTAAGgtttgtcattccatacttttggctttatttgtgttgcgaaatgagatacgcttgactttg-aagatttacacacatctatccacttcatgatatataaactcaaatgcatattttgcttaacgatatctatttctttaccatgcag

upper sequence: GLYMA15G05020.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv06s0004g03360.t01 (Vitis vinifera), 5'ss of exon 1
AAAGTTGTCTGTGGGGTATTCTTTGGATCAGATACCAAACGATATAACGAAGAAGACACCGGCTAGTTTTGAGCCCTCAATTGATTATGTGGTTACTAAGgtaaggagcttagttgttgctgatattgccatcat--ataccaatgtgacttggtaggatgtttttacttttaaattgtaaattttgtataggtaataagtc-----
      ||| || || || || ||||||||||| ||||| || || || ||||| |||||||||||||||||||| || || ||||||||||| || |||| |||   |||  |   | ||  | |     | ||  || | |||||  ||| ||    |||| |    |||    | | ||| || |  | || ||   |      
------GTCGGTTGGTTACTCATTGGATCAGATTCCAAATGACATCACAAAGAAAACACCGGCTAGTTTTGAGCCTTCCATAGATTATGTGGTGACAAAGGCAAGTgtctttctccattctattgtactagttatttatgctaatgtttctttgttaattgttgtagtatttggcatttgaatatt-ttcatgtcatcgatgttcta

upper sequence: GLYMA15G05020.2 (Glycine max), 5'ss of exon 2
lower sequence: PP1S43_32V6.1 (Physcomitrella patens), 5'ss of exon 4
AAAGTTGTCTGTGGGGTATTCTTTGGATCAGATACCAAACGATATAACGAAGAAGACACCGGCTAGTTTTGAGCCCTCAATTGATTATGTGGTTACTAAGgtaaggagcttagttgttgctgatattgccatcatataccaatgtgacttggtaggatgtttttacttttaaattgtaaattttgtataggtaataagtc------------------------------------
|||  | || || || ||  | |||||||| || ||||| ||||| || ||||| || || ||||||||||||||||| ||||| || || |||||||||||   |   |          | |  |        | ||  | | |   |   |   |||| ||||      | || | |   |   || || |   || |                                    
AAAACTTTCAGTCGGATACACATTGGATCAAATTCCAAATGATATCACCAAGAAAACTCCAGCTAGTTTTGAGCCCTCCATTGACTACGTTGTTACTAAGgtgcagccttctcccccaaataagttctatgctttgtaggattcttggtatttctcatgtatttaaaaacgagttattatgatgaaatgggaagatagactcatcgcgttttgtgtccgtctttggagtggtacag