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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGCAAAAACCCCGTCGATGGCTTTTCTGCCGGTTTGGTCGACGAAACCAACATTTTTGAATGGAGTGTAACTATAATTGGACCTCCCGATACTCTTTAgtaagctgtgttcactaaaaacctcttttttcacactaatttatgcgattttgaattgattattgggattttagattccctgtgcttgtgcagtgatgat...

Basic information

species Glycine max
transcript GLYMA15G04470.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G04470.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv06s0004g04430.t01 (Vitis vinifera), 5'ss of exon 2
TTTGCAAAAACCCCGTCGATGGCTTTTCTGCCGGTTTGGTCGACGAAACCAACATTTTTGAATGGAGTGTAACTATAATTGGACCTCCCGATACTCTTTAgtaagctgtgttcactaaaaacctcttttttcacactaatttatgcg-attttgaattgatt---attgggattttagattccctgtgcttgtgcagtgatgat----
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TTTGTAAAAACCCCGTTGATGGCTTCTCCGCCGGTTTGGTCGACGAGAGCAATATCTTTGAATGGAGTGTCACCATTATTGGACCTCCCGATACTCTGTAgta---cgtgttc-----caatctctttttttgctttgaatgttgtgtactttgttatgttttaggttttactctgggaaggattggatcaaggttgagattgtgcct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151408087|gb|EV277895.1|EV277895
EST:     AACATTTTTGAATGGAGTGTAACTATAATTGGACCTCCCGATACTCTTTA                         TGAGGGGGGATTTTTCAATGCCATTATGAGCTTTCCACCCAACTACCCAAA
genomic: AACATTTTTGAATGGAGTGTAACTATAATTGGACCTCCCGATACTCTTTAgtaagctgtg ... tttcgtgtagTGAGGGGGGATTTTTCAATGCCATTATGAGCTTTCCACCCAACTACCCAAA
EST: gi|192330036|gb|FK020852.1|FK020852
EST:     TGTAACTATAATTGGACCTCCCGATACTCTTTA                         TGAGGGGGGATTTTTCAATGCCATTATGAGCTTTCCACCCAACTACCCAAA
genomic: TGTAACTATAATTGGACCTCCCGATACTCTTTAgtaagctgtg ... tttcgtgtagTGAGGGGGGATTTTTCAATGCCATTATGAGCTTTCCACCCAACTACCCAAA
EST: gi|16996926|gb|BM086298.1|BM086298
EST:     AACATTTTTGAATGGAGTGTAACTATAATTGGACCTCCCGATACTCTTTA                         TGAGGGGGGATTTTTCAATGCCATTATGAGCTTTCCACCCAACTACCCAAA
genomic: AACATTTTTGAATGGAGTGTAACTATAATTGGACCTCCCGATACTCTTTAgtaagctgtg ... tttcgtgtagTGAGGGGGGATTTTTCAATGCCATTATGAGCTTTCCACCCAACTACCCAAA
EST: gi|192331436|gb|FK019909.1|FK019909
EST:     AACATTTTTGAATGGAGTGTAACTATAATTGGACCTCCCGATACTCTTTA                         TGAGGGGGGATTTTTCAATGCCATTATGAGCTTTCCACCCAACTACCCAAA
genomic: AACATTTTTGAATGGAGTGTAACTATAATTGGACCTCCCGATACTCTTTAgtaagctgtg ... tttcgtgtagTGAGGGGGGATTTTTCAATGCCATTATGAGCTTTCCACCCAACTACCCAAA
EST: gi|5688311|gb|AI941326.1|AI941326
EST:     AACATTTTTGAATGGAGTGTAACTATAATTGGACCTCCCGATACTCTTTA                         TGAGGGGGGATTTTTCAATGCCATTATGAGCTTTCCACCCAACTACCCAAA
genomic: AACATTTTTGAATGGAGTGTAACTATAATTGGACCTCCCGATACTCTTTAgtaagctgtg ... tttcgtgtagTGAGGGGGGATTTTTCAATGCCATTATGAGCTTTCCACCCAACTACCCAAA
EST: gi|192330035|gb|FK020851.1|FK020851
EST:     AACATTTTTGAATGGAGTGTAACTATAATTGGACCTCCCGATACTCTTTA                         TGAGGGGGGATTTTTCAATGCCATTATGAGCTTTCCACCCAACTACCCAAA
genomic: AACATTTTTGAATGGAGTGTAACTATAATTGGACCTCCCGATACTCTTTAgtaagctgtg ... tttcgtgtagTGAGGGGGGATTTTTCAATGCCATTATGAGCTTTCCACCCAACTACCCAAA
EST: gi|18732524|gb|BM527091.1|BM527091
EST:     AACATTTTTGAATGGAGTGTAACTATAATTGGACCTCCCGATACTCTTTA                         TGAGGGGGGATTTTTCAATGCCATTATGAGCTTTCCACCCAACTACCCAAA
genomic: AACATTTTTGAATGGAGTGTAACTATAATTGGACCTCCCGATACTCTTTAgtaagctgtg ... tttcgtgtagTGAGGGGGGATTTTTCAATGCCATTATGAGCTTTCCACCCAACTACCCAAA