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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACACGCACACCATCAAGTCATCTTCTGGTCTGCTGATATCTATGgtatgttgacttgctacttttgaattttgtgtgttgtgattgtaattcttcaaaaaaataataacaattgcaaatttgaatggattgggactgattggct...

Basic information

species Glycine max
transcript GLYMA15G04140.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209707768|gb|BW683660.1|BW683660
EST:     GCACACGCACACCATCAAGTCATCTTCTGGTCTGCTGATATCTATG                         GCATATTACAGAGATGATCGATTTGCAACATTTGAACAGTTTTATCGTTGT
genomic: GCACACGCACACCATCAAGTCATCTTCTGGTCTGCTGATATCTATGgtatgttgac ... aaaattgcagGCATATTACAGAGATGATCGATTTGCAACATTTGAACAGTTTTATCGTTGT
EST: gi|298175906|gb|HO015311.1|HO015311
EST:     GCACGCGCACACCATCAAGTCATCTTCTGGTCTGCTGGTATCTATG                         GCATATTACAGAGATGATCGATTTGCAACATTTGAACAGTTTTATCGTTGT
genomic: GCACACGCACACCATCAAGTCATCTTCTGGTCTGCTGATATCTATGgtatgttgac ... aaaattgcagGCATATTACAGAGATGATCGATTTGCAACATTTGAACAGTTTTATCGTTGT
EST: gi|193552697|gb|FK506192.1|FK506192
EST:     GCACACGCACACCATCAAGTCATCTTCTGGTCTGCTGATATCTATG                         GCATATTACAGAGATGATCGATTTGCAACATTTGAACAGTTTTATCGTTGT
genomic: GCACACGCACACCATCAAGTCATCTTCTGGTCTGCTGATATCTATGgtatgttgac ... aaaattgcagGCATATTACAGAGATGATCGATTTGCAACATTTGAACAGTTTTATCGTTGT
EST: gi|37993996|gb|CF805742.1|CF805742
EST:     TCAAGTCATCTTCTGGTCTGCTGATATCTATG                         GCATATTACAGAGATGATCGATTTGCAACATTTGAACAGTTTTATCGTTGT
genomic: TCAAGTCATCTTCTGGTCTGCTGATATCTATGgtatgttgac ... aaaattgcagGCATATTACAGAGATGATCGATTTGCAACATTTGAACAGTTTTATCGTTGT
EST: gi|16349341|gb|BI974936.1|BI974936
EST:     GCACACGCACACCATCAAGTCATCTTCTGGTCTGCTGATATCTATG                         GCATATTACAGAGATGATCGATTTGCAACATTTGAACAGTTTTATCGTTGT
genomic: GCACACGCACACCATCAAGTCATCTTCTGGTCTGCTGATATCTATGgtatgttgac ... aaaattgcagGCATATTACAGAGATGATCGATTTGCAACATTTGAACAGTTTTATCGTTGT
EST: gi|120533678|gb|EH261811.1|EH261811
EST:     GCACACGCACACCATCAAGTCATCTTCTGGTCTGCTGATATCTATG                         GCATATTACAGAGATGATCGATTTGCAACATTTGAACAGTTTTATCGTTGT
genomic: GCACACGCACACCATCAAGTCATCTTCTGGTCTGCTGATATCTATGgtatgttgac ... aaaattgcagGCATATTACAGAGATGATCGATTTGCAACATTTGAACAGTTTTATCGTTGT
EST: gi|15664016|gb|BI701387.1|BI701387
EST:     GCACACGCACACCATCAAGTCATCTTCTGGTCTGCTGATATCTATG                         GCATATTACAGAGATGATCGATTTGCAACATTTGAACAGTTTTATCGTTGT
genomic: GCACACGCACACCATCAAGTCATCTTCTGGTCTGCTGATATCTATGgtatgttgac ... aaaattgcagGCATATTACAGAGATGATCGATTTGCAACATTTGAACAGTTTTATCGTTGT
EST: gi|213611480|gb|DB972797.1|DB972797
EST:     GCACACGCACACCATCAAGTCATCTTCTGGTCTGCTGATATCTATG                         GCATATTACAGAGATGATCGATTTGCAACATTTGAACAGTTTTATCGTTGT
genomic: GCACACGCACACCATCAAGTCATCTTCTGGTCTGCTGATATCTATGgtatgttgac ... aaaattgcagGCATATTACAGAGATGATCGATTTGCAACATTTGAACAGTTTTATCGTTGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCACACGCACACCATCAAGTCATCTTCTGGTCTGCTGATATCTATGgtatgttgacttgctacttttgaattttgtgtgttgtgattgtaattcttcaaaaaaataataacaattgcaaatttgaatggattgggactgattggct

- - - - - - - - - - - - - - - -  GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaat