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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATAATTTCTGCTATTGAATTTGACAAGTCTGGTGATCATCTTGCTACTGGTGATCGAGGTGGTCGAGTGGTTCTCTTTGAGAGAACAGATACAAAAGATgtaagactattttttgcttatgcaagtgtttttgtgtaaaaaaaaaaaaccaaataggttccttgttatgcacttaatattgtaacatgtatgttttctgaaacatgcag

Basic information

species Glycine max
transcript GLYMA15G02640.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G02640.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G069631_T02 (Zea mays), 5'ss of exon 2
CATAATTTCTGCTATTGAATTTGACAAGTCTGGTGATCATCTTGCTACTGGTGATCGAGGTGGTCGAGTGGTTCTCTTTGAGAGAACAGATACAAAAGATgtaag-actattttttgc---ttatgcaagtgtttttgtgtaaaaaaaaaaaaccaaataggttccttgttatgcacttaatattgtaacatgtatgttttctgaaacatgcag
|||||| ||||| ||||| |||||||| |||||  |||||||||||||||| ||| ||||||| || |||||| | || || |||||||| |     ||||||||  |||   | |     || |  ||   || |||  ||||         || |    | |  |   | ||||                                      
CATAATATCTGCAATTGAGTTTGACAAATCTGGGAATCATCTTGCTACTGGAGATAGAGGTGGACGTGTGGTTTTGTTCGAAAGAACAGACATTGCTGATgtaagtgctacactatataagttctataatctttcttgcttaaatctcgtgtgcccatagtgctaatgtatgtgcag-------------------------------------

upper sequence: GLYMA15G02640.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G165418_T02 (Zea mays), 5'ss of exon 3
CATAATTTCTGCTATTGAATTTGACAAGTCTGGTGATCATCTTGCTACTGGTGATCGAGGTGGTCGAGTGGTTCTCTTTGAGAGAACAGATACAAAAGATgtaag-actattttttgcttatgcaagtgtttttgtgtaaaaaaaaaaaaccaaataggttccttgttatgcacttaatattgtaacatgtatgttttctgaaacatgcag
||| || ||||| |||||||||||||| |||||||| |||||||| ||||| |||  ||| || || |||||| | ||||| || ||||||      |||||||| || |  | |      |     || |||||  |  || |      || |||| |||    ||||| |    |                                  
CATCATATCTGCAATTGAATTTGACAAATCTGGTGACCATCTTGCCACTGGGGATAAAGGAGGACGTGTGGTTTTATTTGAAAGGACAGATGTTCGGGATgtaagcaccacatgtatgaacttatcttggttttgattttaatatttttccctaataagtt----gttataccagcag---------------------------------

upper sequence: GLYMA15G02640.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G165418_T01 (Zea mays), 5'ss of exon 2
CATAATTTCTGCTATTGAATTTGACAAGTCTGGTGATCATCTTGCTACTGGTGATCGAGGTGGTCGAGTGGTTCTCTTTGAGAGAACAGATACAAAAGATgtaag-actattttttgcttatgcaagtgtttttgtgtaaaaaaaaaaaaccaaataggttccttgttatgcacttaatattgtaacatgtatgttttctgaaacatgcag
||| || ||||| |||||||||||||| |||||||| |||||||| ||||| |||  ||| || || |||||| | ||||| || ||||||      |||||||| || |  | |      |     || |||||  |  || |      || |||| |||    ||||| |                                       
CATCATATCTGCAATTGAATTTGACAAATCTGGTGACCATCTTGCCACTGGGGATAAAGGAGGACGTGTGGTTTTATTTGAAAGGACAGATGTTCGGGATgtaagcaccacatgtatgaacttatcttggttttgattttaatatttttccctaataagtt----gttataccag------------------------------------

upper sequence: GLYMA15G02640.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv09s0002g02470.t01 (Vitis vinifera), 5'ss of exon 2
CATAATTTCTGCTATTGAATTTGACAAGTCTGGTGATCATCTTGCTACTGGTGATCGAGGTGGTCGAGTGGTTCTCTTTGAGAGAACAGATACAAAAGATgtaagactattttttgcttatgcaagtgttt---ttgtgtaaaaaaaaaaaaccaaataggttccttgttatg---cacttaatattgtaacatgtatgttttctgaaacatgcag
 || |||||||| ||||| ||||| || |||||||| || ||||||||||||||||| || || || |||||||| |||||||| || |||||||| |||||  |  | ||||||     | |  || |||   || ||||   |||    |     |   || ||  |  ||   |  | |||||| | | || | | |   ||| ||  || ||
TATTATTTCTGCAATTGAGTTTGATAAATCTGGTGACCACCTTGCTACTGGTGATCGTGGGGGCCGGGTGGTTCTATTTGAGAGGACTGATACAAAGGATgtgcg-ttcttttttaacactactggtctttagtttctgtatccaaacttgataggttgccttactgttcttgtttctttcaatattatgatatctttatacactgtaatgtgtag

upper sequence: GLYMA15G02640.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S301_53V6.1 (Physcomitrella patens), 5'ss of exon 2
CATAATTTCTGCTATTGAATTTGACAAGTCTGGTGATCATCTTGCTACTGGTGATCGAGGTGGTCGAGTGGTTCTCTTTGAGAGAACAGATACAAAAGATgtaagactattttttgcttatgcaagtgtttttgtgtaaaaaaaaaaaaccaaataggttccttgttatgcacttaa-tattgtaacatgtatgttttctgaaacatgcag
||| || || || ||||| || || ||  |||| || ||| | || ||||| || |||||||| ||||| ||||||||||||||||| |||   | ||||||| |     || |   | |||    |||| ||     |       |       |  ||  |  || ||    |||  || || |   | | |||  |  |   ||     
CATTATCTCGGCCATTGAGTTCGATAAAACTGGAGAGCATTTGGCAACTGGAGACCGAGGTGGACGAGTTGTTCTCTTTGAGAGAACGGATGGCAGAGATgtacg-----ttctgtttcatgtcgttgttcttaatccatgctggtacctgttcttagtgtccagtgatatgtttatctagtgcatactatctgtgctg-gcgtca-----

upper sequence: GLYMA15G02640.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ08844 (Selaginella moellendorffii), 5'ss of exon 2
CATAATTTCTGCTATTGAATTTGACAAGTCTGGTGATCATCTTGCTACTGGTGATCGAGGTGGTCGAGTGGTTCTCTTTGAGAGAACAGATACAAAAGATgt---aagactattttttgcttatgcaagtgtttttgtgtaaaaaaaaaaaaccaaataggttccttgttatgcacttaatattgtaacatgtatgttttctgaaacatgcag
||| || || || || ||||| |||||| ||||||||||||| || ||||| ||||| || || ||||| || |||||||| ||||  |||   ||||| ||   ||||  |  | | | || |   | |   ||   ||   |  | | | || |                                                         
CATTATATCCGCAATCGAATTCGACAAGACTGGTGATCATCTCGCAACTGGAGATCGCGGAGGGCGAGTAGTCCTCTTTGACAGAAGTGATGATAAAGAGgtgcgaagagaaagtctggtttttttcattaacttca-gtggtactatatatcctag--------------------------------------------------------

upper sequence: GLYMA15G02640.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ09063 (Selaginella moellendorffii), 5'ss of exon 2
CATAATTTCTGCTATTGAATTTGACAAGTCTGGTGATCATCTTGCTACTGGTGATCGAGGTGGTCGAGTGGTTCTCTTTGAGAGAACAGATACAAAAGATgt---aagactattttttgcttatgcaagtgtttttgtgtaaaaaaaaaaaaccaaataggttccttgttatgcacttaatattgtaacatgtatgttttctgaaacatgcag
||| || || || || ||||| |||||| ||||||||||||| || ||||| ||||| || || ||||| || |||||||| |||   |||   ||||| ||   ||||  |  | | | || |     | | ||   ||   |  | | | || |                                                         
CATTATATCCGCAATCGAATTCGACAAGACTGGTGATCATCTCGCAACTGGAGATCGCGGAGGGCGAGTAGTCCTCTTTGACAGATGTGATGATAAAGAGgtgtgaagagaaagtctggtttttttctttatcttca-gtggtactatatatcctag--------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14258666|gb|BG881574.1|BG881574
EST:     GTGATCGAGGTGGTCGAGTGGTTCTCTTTGAGAGAACAGATACAAAAGAT                         CATGGTGGATCAAGAAGGGATTTGGAGAGGATGGACTATTCTATTGGTAGG
genomic: GTGATCGAGGTGGTCGAGTGGTTCTCTTTGAGAGAACAGATACAAAAGATgtaagactat ... aaacatgcagCATGGTGGATCAAGAAGGGATTTGGAGAGGATGGACTATTCTATTGGTAGG
EST: gi|208253993|gb|GE052541.1|GE052541
EST:     GTGATCGAGGTGGTCGAGTGGTTCTCTTTGAGAGAACAGATACAAAAGAT                         CATGGTGGATCAAGAAGGGATTTGGAGAGGATGGACTATTCTATTGG
genomic: GTGATCGAGGTGGTCGAGTGGTTCTCTTTGAGAGAACAGATACAAAAGATgtaagactat ... aaacatgcagCATGGTGGATCAAGAAGGGATTTGGAGAGGATGGACTATTCTATTGG
EST: gi|24205994|gb|BU965247.1|BU965247
EST:     GTGATCGAGGTGGTCGAGTGGTTCTCTTTGAGAGAACAGATACAAAAGAT                         CATGGTGGATCAAGAAGGGATTTGGAGAGGATGGACTATTCTATTGGTAGG
genomic: GTGATCGAGGTGGTCGAGTGGTTCTCTTTGAGAGAACAGATACAAAAGATgtaagactat ... aaacatgcagCATGGTGGATCAAGAAGGGATTTGGAGAGGATGGACTATTCTATTGGTAGG
EST: gi|207825949|gb|GD799746.1|GD799746
EST:     GATCGAGGTGGTCGAGTGGTTCTCTTTGAGAGAACAGATAACAAAAAGAT                         CATG-TGGATC
genomic: GATCGAGGTGGTCGAGTGGTTCTCTTTGAGAGAACAGATA-CAAAA-GATgtaagactat ... aaacatgcagCATGGTGGATC
EST: gi|207704778|gb|GD685159.1|GD685159
EST:     GTGATCGAGGTGGTCGAGTGGTTCTCTTTGAGAGAACAGATACAAAAGAT                         CATG-TGGATC
genomic: GTGATCGAGGTGGTCGAGTGGTTCTCTTTGAGAGAACAGATACAAAAGATgtaagactat ... aaacatgcagCATGGTGGATC