Sequence
atgc intronic sequence ATGC exonic sequenceGGAGCCTAGGCGGACAATGAATGCTAGTGAGTGTGTTGCCAGGGGCTGTGCATTGCAGTGTGCAATTCTCAGCCCAACTTTTAAAGTACGGGAGTTTCAGgtaaaaattttccctgccattataatgttttaaaattattcaatatggaactgttcagatctttttacgaatcatggacttcagcattttttattttttt...
Basic information
species | Glycine max |
transcript | GLYMA15G01750.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G01750.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os01g08560.2 (Oryza sativa), 5'ss of exon 2
GGAGCCTAGGCGGACAATGAATGCTAGTGAGTGTGTTGCCAGGGGCTGTGCATTGCAGTGTGCAATTCTCAGCCCAACTTTTAAAGTACGGGAGTTTCAGgtaaaaa------ttttccctgccattataa-tgttttaaaattattcaatatggaactgttcagatctttttacgaatcatggacttcagcattttttattttttt
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AGAACCAAGGAGGACAATGAATGCGAGTGAATGTGTTGCCAGGGGATGTGCGCTGGAGTGTGCTATCCTTAGTCCCACTTTTAAAGTGCGAGAGTTTCAGgtatgtgcccgctttcaccctgctgccttctctgctttggctatctgcacaatacattaatagaaatcttgctgct--tcatg--ccttaaaatctctaattaa---
upper sequence: GLYMA15G01750.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G063676_T01 (Zea mays), 5'ss of exon 2
GGAGCCTAGGCGGACAATGAATGCTAGTGAGTGTGTTGCCAGGGGCTGTGCATTGCAGTGTGCAATTCTCAGCCCAACTTTTAAAGTACGGGAGTTTCAGgtaaaa----attttccctgccattataatgttttaaaattattcaatatggaactgttcagatctttttacgaatcatggacttcagcattttttattttttt
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GGAGCCGAGACGAACCATGAATGCAAGCGAGTGTGTTGCGCGGGGCTGTGCTCTCCAGTGTGCTATTCTCAGCCCCACTTTCAAAGTGCGGGAATTCCAGgtataatctcattttttttcttcctatgttgttttaagctatggcagggttagattattctagtgccggtctatatgatagactgtcgtctatgctccgt----
upper sequence: GLYMA15G01750.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G361605_T02 (Zea mays), 5'ss of exon 4
GGAGCCTAGGCGGACAATGAATGCTAGTGAGTGTGTTGCCAGGGGCTGTGCATTGCAGTGTGCAATTCTCAGCCCAACTTTTAAAGTACGGGAGTTTCAGgtaaaaattttccctgccatta---taatgttttaaaattattcaatatggaactgttcagatctttttacgaatcatggacttcagcattttttattttttt
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GGAGCCAAGGCGAACCATGAATGCAAGTGAGTGTGTTGCACGAGGATGTGCTCTTCAGTGTGCTATGCTCAGCCCCACTTTCAAAGTGCGGGAATTCCAGgtttgagctcatctttttatctggtttaagctaccgaatggtt--atattattccactgccggtctgtcac-actaatggatactaaaataattgcatactga
upper sequence: GLYMA15G01750.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G023232_T01 (Zea mays), 5'ss of exon 2
GGAGCCTAGGCGGACAATGAATGCTAGTGAGTGTGTTGCCAGGGGCTGTGCATTGCAGTGTGCAATTCTCAGCCCAACTTTTAAAGTACGGGAGTTTCAGgtaaaaattttc---cctgccat--tataatgttttaaaattattcaatatggaactgt-tcagatctttttacgaatcatggacttcagcattttttattttttt
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GGAGCCAAGACGAACCATGAATGCAAGTGAGTGTGTTGCGCGAGGATGTGCTCTTCAGTGTGCTATTCTCAGCCCCACTTTCAAAGTGCGAGAATTCCAGgtatcagctccttagcttaccttagtatatctgttttaagctactatgggttggattatactagactagtctat--atcttaaactgctgtctatgcttgct----
upper sequence: GLYMA15G01750.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G79920.2 (Arabidopsis thaliana), 5'ss of exon 2
GGAGCCTAGGCGGACAATGAATGCTAGTGAGTGTGTTGCCAGGGGCTGTGCATTGCAGTGTGCAATTCTCAGCCCAACTTTTAAAGTACGGGAGTTTCAGgtaa-------aaattttccct------------gccattataatgt--tttaaaattattcaata--tggaactgttcagatctttttacgaatcatggacttcagcattttttattttttt--
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GGAGCCCAGGCGTACAATGAATGCAAGTGAGTGTGTGTCGAGGGGATGTGCCTTGCAGTGTGCCATTCTCAGTCCGACCTTTAAAGTTCGCGAATTCCAGgtaatttgtgcatatctatgcttaagtaaatgtcgttattttaatgtacttgtaagcaactcgagaactgttatactccaggttatctgactagtcatattatgatttattttttgttctcttag
upper sequence: GLYMA15G01750.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G79930.1 (Arabidopsis thaliana), 5'ss of exon 2
GGAGCCTAGGCGGACAATGAATGCTAGTGAGTGTGTTGCCAGGGGCTGTGCATTGCAGTGTGCAATTCTCAGCCCAACTTTTAAAGTACGGGAGTTTCAGgtaa-------aaattttccct---------gccattataatgttttaaaattattcaatatg-gaactgtt------cagatctttttacgaatcatggacttcagcattttttattttttt--
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GGAGCCCAGGCGGACAATGAATGCAAGTGAGTGTGTGTCAAGGGGATGTGCCTTGCAGTGTGCCATTCTCAGTCCGACCTTTAAAGTTCGCGAATTCCAGgtaattggtgcatatctacgcttaagtaaatgtcgttattttcatgtacttgtaagcaactcgagaacttttatactctagattatctgactagtcatattgtgatttattttttgttctcttag
upper sequence: GLYMA15G01750.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv09s0002g04680.t01 (Vitis vinifera), 5'ss of exon 1
GGAGCCTAGGCGGACAATGAATGCTAGTGAGTGTGTTGCCAGGGGCTGTGCATTGCAGTGTGCAATTCTCAGCCCAACTTTTAAAGTACGGGAGTTTCAGgtaaaaattttccctgcc---attataatgttttaaaattattcaatatgg--aactgttcagatctttttacgaatcatggacttcagcattttttattttttt
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GGAACCTAGGCGGACAATGAATGCAAGTGAGTGTGTGGCCAAGGGCTGTGCTCTACAATGTGCAATTCTTAGCCCAACATTTAAAGTGCGAGAGTTTCAGgtaaaactcctttcaacttaggttgtatcttattttctttatttattgaagtgaaatatgtgttgcttttttacggctattgagttaaatttccttggtt-----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193416037|gb|FK376671.1|FK376671EST: CATTGCAGTGTGCAATTCTCAGCCCAACTTTTAAAGTACGGGAGTTTCAG GTCAATGAAAGCTTTCCTTTCTCAATTTCTCTCTCGTGGAAAGGTCCAAGT
genomic: CATTGCAGTGTGCAATTCTCAGCCCAACTTTTAAAGTACGGGAGTTTCAGgtaaaaattt ... tgatgtgaagGTCAATGAAAGCTTTCCTTTCTCAATTTCTCTCTCGTGGAAAGGTCCAAGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGAGCCTAGGCGGACAATGAATGCTAGTGAGTGTGTTGCCAGGGGCTGTGCATTGCAGTGTGCAATTCTCAGCCCAACTTTTAAAGTACGGGAGTTTCAGgtaaaaattttccctgccattataatgttttaaaattattcaatatggaactgttcagatctttttacgaatcatggacttcagcattttttattttttt
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