Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCTTCTTCCGTCAAAAGGAGGGTTGAAGATGTCGTGCCAATTGCTACCGGCCACGAGCGTGAGGAGATTCAGGCTGATCTTGAGgtttcttttttttctgccttttcaattaaataattataataataatatcaatcctatccatttttgtatcatataaacaaacctagattaattgtgcatatatatcctgattttttcaatgttagtctgttgataatttttttctttttgttcag

Basic information

species Glycine max
transcript GLYMA15G01360.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17400645|gb|BM177427.1|BM177427
EST:     TGCCAATTGCTACCGGCCACGAGCGTGAGGAGATTCAGGCTGATCTTGAG                         GGAAGGGATATTCTTGAAATAAACCATCCCGTCGGCCCTTTTGGCACAAAG
genomic: TGCCAATTGCTACCGGCCACGAGCGTGAGGAGATTCAGGCTGATCTTGAGgtttcttttt ... ttttgttcagGGAAGGGATATTCTTGAAATAAACCATCCCGTCGGCCCTTTTGGCACAAAG
EST: gi|254322314|gb|GR837728.1|GR837728
EST:     GCCAAATTGCTACCGGCCACGAGCGTGAGGAGATTCAGGCTGATCTTGAG                         GGAAGGGATATTCTTGAAATAAACCATCCCGTCGGCCCTTTTGGCACAAAG
genomic: GCC-AATTGCTACCGGCCACGAGCGTGAGGAGATTCAGGCTGATCTTGAGgtttcttttt ... ttttgttcagGGAAGGGATATTCTTGAAATAAACCATCCCGTCGGCCCTTTTGGCACAAAG
EST: gi|7589397|gb|AW705172.1|AW705172
EST:     TGCCAATTGCTACCGGCCACGAGCGTGAGGAGATTCAGGCTGATCTTGAG                         GGAAGGGATATTCTTGAAATAAACCATCCCGTCGGCCCTTTTGGCACAAAG
genomic: TGCCAATTGCTACCGGCCACGAGCGTGAGGAGATTCAGGCTGATCTTGAGgtttcttttt ... ttttgttcagGGAAGGGATATTCTTGAAATAAACCATCCCGTCGGCCCTTTTGGCACAAAG
EST: gi|10253522|gb|BE821288.1|BE821288
EST:     TGCCAATTGCTACCGGCCACGAGCGTGAGGAGATTCAGGCTGATCTTGAG                         GGAAGGGATATTCTTGAAATAAACCATCCCGTCGGCCCTTTTGGCACAAAG
genomic: TGCCAATTGCTACCGGCCACGAGCGTGAGGAGATTCAGGCTGATCTTGAGgtttcttttt ... ttttgttcagGGAAGGGATATTCTTGAAATAAACCATCCCGTCGGCCCTTTTGGCACAAAG
EST: gi|192320916|gb|FK013110.1|FK013110
EST:     TGCCAATTGCTACCGGCCACAAGCGTGAGGAGATTCAGGCTGATCTTGAG                         GGAAGGGATATTCTTGAAATAAACCATCCCGTCGGCCCTTTTGGCACAAAG
genomic: TGCCAATTGCTACCGGCCACGAGCGTGAGGAGATTCAGGCTGATCTTGAGgtttcttttt ... ttttgttcagGGAAGGGATATTCTTGAAATAAACCATCCCGTCGGCCCTTTTGGCACAAAG
EST: gi|192333618|gb|FK025435.1|FK025435
EST:     TGCCAATTGCTACCGGCCACGAGCGTGGGGAGATTCAGGCTGATCTTGAG                         GGAAGGGATATTCTTGAAATAAACCATCCCGTCGGCCCTTTTGGCACAAAG
genomic: TGCCAATTGCTACCGGCCACGAGCGTGAGGAGATTCAGGCTGATCTTGAGgtttcttttt ... ttttgttcagGGAAGGGATATTCTTGAAATAAACCATCCCGTCGGCCCTTTTGGCACAAAG
EST: gi|298195945|gb|HO044336.1|HO044336
EST:     TGCCAATTGCTACCGGCCACGAGCGTGAGGAGATTCAGGCTGATCTTGAG                         GGAAGGGATATTCTTGAAATAAACCGTCCCGTCGGCCCTTTTGGCACAAAG
genomic: TGCCAATTGCTACCGGCCACGAGCGTGAGGAGATTCAGGCTGATCTTGAGgtttcttttt ... ttttgttcagGGAAGGGATATTCTTGAAATAAACCATCCCGTCGGCCCTTTTGGCACAAAG
EST: gi|21677694|gb|BQ630045.1|BQ630045
EST:     TGCCAATTGCTACCGGCCACGAGCGTGAGGAGATTCAGGCTGATCTTGAG                         GGAAGGGATATTCTTGAAATAAACCATCCCGTCGGCCCTTTTGGCACAAAG
genomic: TGCCAATTGCTACCGGCCACGAGCGTGAGGAGATTCAGGCTGATCTTGAGgtttcttttt ... ttttgttcagGGAAGGGATATTCTTGAAATAAACCATCCCGTCGGCCCTTTTGGCACAAAG
EST: gi|254322313|gb|GR837727.1|GR837727
EST:     TGCCAATTGCTACCGGCCACGAGCGTGAGGAGATTCAGGCTGATCTTGAG                         GGAAGGGATATTCTTGAAATAAACCATCCCGTCGGCCCTTTTGGCACAAAG
genomic: TGCCAATTGCTACCGGCCACGAGCGTGAGGAGATTCAGGCTGATCTTGAGgtttcttttt ... ttttgttcagGGAAGGGATATTCTTGAAATAAACCATCCCGTCGGCCCTTTTGGCACAAAG
EST: gi|33388406|gb|CA851613.1|CA851613
EST:     TGCCAATTGCTACCGGCCACGAGCGTGAGGAGATTCAGGCTGATCTTGAG                         GGAAGGGATATTCTTGAAATAAACCATCCCGTCGGCCCTTTTGGCACAAAG
genomic: TGCCAATTGCTACCGGCCACGAGCGTGAGGAGATTCAGGCTGATCTTGAGgtttcttttt ... ttttgttcagGGAAGGGATATTCTTGAAATAAACCATCCCGTCGGCCCTTTTGGCACAAAG
EST: gi|15814678|gb|BI786953.1|BI786953
EST:     TGCCAATTGCTACCGGCCACGAGCGTGAGGAGATTCAGGCTGATCTTGAG                         GGAAGGGATATTCTTGAAATAAACCATCCCGTCGGCCCTTTTGGCACAAAG
genomic: TGCCAATTGCTACCGGCCACGAGCGTGAGGAGATTCAGGCTGATCTTGAGgtttcttttt ... ttttgttcagGGAAGGGATATTCTTGAAATAAACCATCCCGTCGGCCCTTTTGGCACAAAG
EST: gi|192333647|gb|FK025436.1|FK025436
EST:     TGCCAATTGCTACCGGCCACGAGCGTGGGGAGATTCAGGCTGATCTTGAG                         GGAAGGGATATTCTTGAAATAAACCATCCCGTCGGCCCTTTTGGCACAAAG
genomic: TGCCAATTGCTACCGGCCACGAGCGTGAGGAGATTCAGGCTGATCTTGAGgtttcttttt ... ttttgttcagGGAAGGGATATTCTTGAAATAAACCATCCCGTCGGCCCTTTTGGCACAAAG
EST: gi|5677887|gb|AI939017.1|AI939017
EST:     TGCCAATTGCTACCGGCCACGAGCGTGAGGAGATTCAGGCTGATCTTGAG                         GGAAGGGATATTCTTGAAATAAACCATCCCGTCGGCCCTTTTGGCACAAAG
genomic: TGCCAATTGCTACCGGCCACGAGCGTGAGGAGATTCAGGCTGATCTTGAGgtttcttttt ... ttttgttcagGGAAGGGATATTCTTGAAATAAACCATCCCGTCGGCCCTTTTGGCACAAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGCTTCTTCCGTCAAAAGGAGGGTTGAAGATGTCGTGCCAATTGCTACCGGCCACGAGCGTGAGGAGATTCAGGCTGATCTTGAGgtttcttttttttctgccttttcaattaaataattataataataatatcaatcctatccatttttgtatcatataaacaaacctagattaattgtgcatatatatcctgattttttcaatgttagtctgttgataatttttttctttttgttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT