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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTCATCAATATCATCATGGCTAGACCCCAACAACGCTATCGAGGTGTCCGCCAGAGGCACTGGGGCTCTTGGGTCTCTGAAATTCGCCACCCTCTTTTgtaatcttctttttaattaaaccttctcaaagtaaattgctacattcttgttgcatactaattaacattgttgttgtttgtttggtgtttgttcacag

Basic information

species Glycine max
transcript GLYMA15G00660.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G00660.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S79_25V6.1 (Physcomitrella patens), 5'ss of exon 1
TCTTCATCAATATCATCATGGCTAGACCCCAACAACGCTATCGAGGTGTCCGCCAGAGGCACTGGGGCTCTTGGGTCTCTGAAATTCGCCACCCTCTTTTgtaa-tcttctttttaatt--aaaccttct-caaagtaaattgctac-attcttgttgc-atactaattaacattgttgttgtttgtttggtgtttgttcacag
                 ||||  || ||   |||  | || ||||| || ||||| ||||||||||| || |||||||| || ||||||||||| ||| ||||| || |  |  |   |   | | | |  || |     || || | ||     |||  | | |     |  ||||| | ||| |  |  | || ||| |   
-----------------ATGGGCAGGCC---ACAGAGATACCGAGGGGTGCGCCAAAGGCACTGGGGATCGTGGGTCTCCGAGATTCGCCACCCGCTTCTgtaagtcatgctcctgtctccgagcataccacagatcctttttctccgatgaccattgtgagaatgtgggatgttgttttagttggaat--ttttcgtttat--