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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAGAAGCTGGAAAAATTTATTTGCATACATGGGGCCTGGGTTTCTTGTTTCCATTGCATATATAGATCCAGGAAACTgtaagaacacactattcatgattttcttctgtaatgaaaggaaatctatttctgacatggtatacttatggtattctaatgataattggcag

Basic information

species Glycine max
transcript GLYMA15G00590.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G00590.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G069198_T04 (Zea mays), 5'ss of exon 3
AGGAGAAGCTGGAAAAATTTATTTGCATACATGGGGCCTGGGTTTCTTGTTTCCATTGCATATATAGATCCAGGAAACTgtaagaacacactattcatgattttcttctgtaatga--aaggaaatctatttctgacatggtatacttatggta---ttctaatgataattggcag
|  |  || ||||| || |||||  ||||||| |||||||| ||||| || || ||||||||||| ||||| |||||||||||||  |    |||||   ||||||||  |  | |   || |  ||  || |    || || || |  |   |   || |     |   | ||||
AAAAACAGTTGGAAGAACTTATTCTCATACATAGGGCCTGGATTTCTCGTCTCAATTGCATATATTGATCCTGGAAACTgtaagattaacggattcac--ttttcttcgattctcattgagtatttcccttccatctattgtgtattcttcacaaattttttggtgtgtcttgcag

upper sequence: GLYMA15G00590.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G80830.1 (Arabidopsis thaliana), 5'ss of exon 2
AGGAGAAGCTGGAAAAATTTATTTGCATACATGGGGCCTGGGTTTCTTGTTTCCATTGCATATATAGATCCAGGAAACTgtaagaacacactattcatgattttcttctgtaatgaaaggaaatctatttctgacatggtatacttatggta-ttctaatgataattggcag
| ||  |||||||| ||||| ||||| ||| | || ||||| ||||||||||| || |||||||| ||||| ||||||||||||  |||| || ||    | || || | |||| |   | ||   |  | ||| ||| |  | |  || |  ||||     |  |  ||||
AAGAAGAGCTGGAAGAATTTCTTTGCTTACTTAGGCCCTGGTTTTCTTGTTTCAATCGCATATATTGATCCTGGAAACTgtaag--cacattactctc--tctttttttttaataatctgtaa---agatttgagatgattcattcttgtttcttcttcctgtgttctgcag

upper sequence: GLYMA15G00590.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv09s0070g00210.t01 (Vitis vinifera), 5'ss of exon 3
AGGAGAAGCTGGAAAAATTTATTTGCATACATGGGGCCTGGGTTTCTTGTTTCCATTGCATATATAGATCCAGGAAACTgtaagaacacactattcatgattttcttctgtaatgaaaggaaatctatttctgacatggtatacttatg-gtattctaatgataattggcag
|||| |||||||||||| ||||||||||| ||||| |||||||||||||| || ||||||||||| ||||| ||||| ||||||| |  |   ||| |  ||   || | || |   |  ||||    |||  | ||  |   || ||   |||| |         | ||||
AGGAAAAGCTGGAAAAACTTATTTGCATATATGGGTCCTGGGTTTCTTGTGTCTATTGCATATATTGATCCTGGAAATTgtaaga-ctgagacttcttagttcctttttttactactataaaatgctcttccta-attatgccctcatctatattttgtgatcgccttgcag