Sequence
atgc intronic sequence ATGC exonic sequenceCTTGTTTTTTAAACAGGAGATGGAACTTTCACTTGTTGGCCTTCAGAATGCTGGCAAGACTTCTCTTGTCAATGCAATTGCTgtgagttgctgcagcattgcaattttgactcaatttagaaattaaaccctgaaattcaatttctgttattactgttattgctctcatggccttgttttgacattacattgatgtttggtttttttgtttacctgcag
Basic information
species | Glycine max |
transcript | GLYMA14G39540.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G39540.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os02g49980.2 (Oryza sativa), 5'ss of exon 2
CTTGTTTTTTAAACAGGAGATGGAACTTTCACTTGTTGGCCTTCAGAATGCTGGCAAGACTTCTCTTGTCAATGCAATTGCTgtgagttgctgcagcattgcaattttgactcaatttagaaattaaaccctgaaatt--caatttctgtt-attactgttattgctctcatggccttgttttgacattacattgatgtttggtttttttgtttacctgcag
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CTTGTTTTTCAAGCAGGAGATGGAGCTCTCCCTGGTTGGCCTGCAGAATGCTGGGAAAACATCACTAGTTAATGCTGTTGCTgtatgtatcatc--taacggaatctttatttatcttaccattttaatgttatgcctggtggttttaattcgttgctggcatgcttctcag--------------------------------------------------
upper sequence: GLYMA14G39540.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G37680.1 (Arabidopsis thaliana), 5'ss of exon 2
CTTGTTTTTTAAACAGGAGATGGAACTTTCACTTGTTGGCCTTCAGAATGCTGGCAAGACTTCTCTTGTCAATGCAATTGCTgtgagttgctgcagcattgcaattttgactcaatttagaaattaaaccctgaaattcaatttctgttattactgttattgctctcat-ggccttgttttgacattacattgatgtttggtttttttgtttacctgcag
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CTTGTTTTTCAAACAAGAGATGGAGCTGTCACTCGTTGGACTTCAAAATGCTGGGAAGACTTCTCTTGTCAATGCCATTGCTgtgagtagaaatttcatcagaggttttagtcgataaatagtattctcgaacaaatctaatcttacgcgtttcacttcttgttttctttggatttgtcaag--------------------------------------
upper sequence: GLYMA14G39540.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv14s0006g01090.t01 (Vitis vinifera), 5'ss of exon 3
CTTGTTTTTTAAACAGGAGATGGAACTTTCACTTGTTGGCCTTCAGAATGCTGGCAAGACTTCTCTTGTCAATGCAATTGCTgtgagttgctgcagcattgcaattttgactcaatttagaaattaaaccctgaaattcaatttctgttattactgttattgctctcatggccttgttttgacattacattgatgtttggtttttttgtttacctgcag
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CTTATTTTATAAACAGGAAATGGAACTTTCTCTTATAGGCCTTCAGAATGCAGGAAAGACATCTCTTCTTAATGCCATTGCTgtgagtgaacaccaaatctg---tgtgattcctttctgttattgtttagtga--------ttttcttttaaccatgat-gctttcataaccag--------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208331608|gb|GE132321.1|GE132321EST: TCAATGCAATTGCT ACTGGGGGCTACAGTGAGGACATGATTCCAACT
genomic: TCAATGCAATTGCTgtgagttgct ... ttacctgcagACTGGGGGCTACAGTGAGGACATGATTCCAACT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTGTTTTTTAAACAGGAGATGGAACTTTCACTTGTTGGCCTTCAGAATGCTGGCAAGACTTCTCTTGTCAATGCAATTGCTgtgagttgctgcagcattgcaattttgactcaatttagaaattaaaccctgaaattcaatttctgttattactgttattgctctcatggccttgttttgacattacattgatgtttggtttttttgtttacctgcag
- - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA